Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241679g00029 ATGGATCCTTATGATGATATTATCCCAACGGCACCTGCTGCGCGCGGTCGTGCTGGGGGAAGGTTTGCTCCAAAGGTCAAATCGAAACCGGCTCCTCGGAAGGAAATAAATGCTGAAGAACATGAAATCTTGTCTAAAGATGGAAAGGGAGAACGTGTTGCTTCATCATCCACCGCTGCCGCCACCACCACCCCGACCAGTAAGGACGCAGATACTGTTACTCAGAGTAAATGCCATGCTGATGTTGCTTCTACTTTGAGTATGCCACCTCAACATTCTACAGCTTTGAATTTAGAGGATGCCACAATATCTGAAATGGCAAATCCTCAGCAAGTTGGTGTAAATGTAGATACTGCACCCGTAGTGGATGATCTACCTTCCACGGCCGCATCGACTGAAGTTGAGTCAGCCCGTGAGGAAGATCCTGTAGCTTTGGAAGGCAGCCGAGATTCTAATTTTGTTCCCGAGACCAATCCCAGTAATGACTCAACACATCCAGTTCAAACTGCGGATCCTGTAGAAATGCCATCAAATAATGTAGCTACTCCATCTACAATATGCTCAACTGGAGGTAGCATGGGAGAGCCAGCTAATGTGAAAGGGCCGGTTCTTGATAGCAACAATCGCGTGGGACTCACTGATGATTTGATGCAAGTTGGCTCAGATGTGGGCTTCGAAAGTGCTTTAGAGAATGGTGCTGAAATACTTGAGAGCAAAATTCAATCGAACCTTAACTTTGGAAGAGAACAAGAGGCAGAGTCTGAGAAATTTGAATTGGATCCTTTTAGTGAAGTCCTCCCTGATCCTGGCACTAGGACTGCTCATAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAGTCACAAAACCTGATGTTGCTTCTGCTTCATCTGGTGATACAATGTCAAGGTCTGTTGAGTTGCCTACATTTTGCATGAATGAAGTTCAATCTTTTCAATCTAGTGGTGATGCCGTTAGTATGCTAAATCAATCAAGCAATTCAACTGTACCTACATTAGAGATTCCTATGGCAACTGATTTATCAAGTAAGTTTGATTATGTGGACTCGAGTATTCCATTCTCTAAAGACAACAATAATTTGGCAGCAGTCAGTGCTTCCCAACTGGATTCTCTCGATGCCGTGTTTCCTGATGTTGCAGTTCATAATGGAACTAGGGATTGGCCTTCTAGTGTTGGTAAATCAGCTGCAGAGAGTGCAGACATATTTGCTGGGTTGGAATCCATTGATGACTTTACCACCCAAGCTGCCACTAATACAGGAAAACCAATTCTTCAATCGGAAACAGAGGAAGTTGTGGACTTGAGTCCTGGCTGCCCAGTTGATGATGTCTCAGATTATCAGTCCAAGAAAACTAACAAAGATCCAGCTTCTGAAATCCTAGTGGATGACGAACTGACAAATTCCCCAAATAGTCCCACATTGGCTGATCTTATGCAGGACACTAATGGAAGAAAAAAGGAAGACACAGTTTTGAGTTCTCTTAGGAAGCGTAAAAAATCTTCTGCTGTTAATGAGGATGAAGGTATTAAAATCTCAAGGCAGCGGAGGAAGCAAGGAACTCATAAACCTGTTAAAAACTCAGTGAATGAGGATCAAGATGATTATGACCTTGACCCTCCCTATAATCCATGTGGAGATGAACTTGAAGAGAATGAGAATGATGATGAATTTGAAGTGGATGAATCCTCCAAGAAGAAAGCATCATCAACTTCAACAAAGAAATCAGTAGCTAAAAATGGAAAAGCATCTCAAAAGCGTAAGAAGGCTAATGAGGATGTGGAAAACGCCAACAAAGAACCTCCTAAAAAAAAGTTCTCTCATTCTAGCAGACGAAAAAAAAGATGCGTGGACCCAGCTCTGCTGGAAATTCCTGAGGAAGAACTTGATATGCACACATTGCCTCTCAAGGATATCATTTTACTTGCAGAACACAGGGAGCGGCTGGCAAAAAAGGAGGCAGCAACTCCAAGAACATCTACCAATCAAAGTGGCGGAGATTCCCAATATGAGGCTGAGGTTGGTGCTAATGCTAATAGTGAAGAGGAGTACTTAGGTTCAGAAGATGATAGGGAAGAAGGTGATGATCAAGACAGTGAAAGTGTTCCGCTGGCTTCCTCTTTATTCAACTATCAATCCTTCATGGAAAAGACTCCTAGGGGAAAATGGACAAAACACGATAATGAACTGTTCTATGAGGCGGTTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAACTTTTTCCTGATCGATCACGTCACCAAATTAAGTTGAAGTTCAAGAAAGAAGAGCGACAGCATCCTCTGCGATTAGCTGATGCCGTAAATAATCGTTCGAAAGATCATTTTCATTTTAAGATGTTGATTGAGAGACTGCAGCAAGCTTCAGCAAAGGCAGATCAAGACCCTGGTAAACATGCCTCAGATTCCATGGCAGCGGAGGAGGTTGAGAATTCGGCACCTGGAACTAATGTTGGAACAACTGAACAGGAAGAGTTTGCAACAACTGAGCAGGAGGGCAATGTCGAAGATCAGCAAGATTCTAAGCCAGTTCCTAGTCCAGAGCAATTGGATAATAGTGATGATGAATTAGCAATGTGGGCCCAATATAAAAGTGAAATTTAG 2649 0.4296 MDPYDDIIPTAPAARGRAGGRFAPKVKSKPAPRKEINAEEHEILSKDGKGERVASSSTAAATTTPTSKDADTVTQSKCHADVASTLSMPPQHSTALNLEDATISEMANPQQVGVNVDTAPVVDDLPSTAASTEVESAREEDPVALEGSRDSNFVPETNPSNDSTHPVQTADPVEMPSNNVATPSTICSTGGSMGEPANVKGPVLDSNNRVGLTDDLMQVGSDVGFESALENGAEILESKIQSNLNFGREQEAESEKFELDPFSEVLPDPGTRTAHKFQPKIKPRPRVVTKPDVASASSGDTMSRSVELPTFCMNEVQSFQSSGDAVSMLNQSSNSTVPTLEIPMATDLSSKFDYVDSSIPFSKDNNNLAAVSASQLDSLDAVFPDVAVHNGTRDWPSSVGKSAAESADIFAGLESIDDFTTQAATNTGKPILQSETEEVVDLSPGCPVDDVSDYQSKKTNKDPASEILVDDELTNSPNSPTLADLMQDTNGRKKEDTVLSSLRKRKKSSAVNEDEGIKISRQRRKQGTHKPVKNSVNEDQDDYDLDPPYNPCGDELEENENDDEFEVDESSKKKASSTSTKKSVAKNGKASQKRKKANEDVENANKEPPKKKFSHSSRRKKRCVDPALLEIPEEELDMHTLPLKDIILLAEHRERLAKKEAATPRTSTNQSGGDSQYEAEVGANANSEEEYLGSEDDREEGDDQDSESVPLASSLFNYQSFMEKTPRGKWTKHDNELFYEAVRQFGTDFSMIQQLFPDRSRHQIKLKFKKEERQHPLRLADAVNNRSKDHFHFKMLIERLQQASAKADQDPGKHASDSMAAEEVENSAPGTNVGTTEQEEFATTEQEGNVEDQQDSKPVPSPEQLDNSDDELAMWAQYKSEI 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 592 611 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 51 75 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 658 708 - -
Stsc241679g00029 882 CDD SANT 729 770 IPR001005 -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 488 522 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 828 863 - -
Stsc241679g00029 882 Gene3D - 730 792 - -
Stsc241679g00029 882 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 276 881 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 28 49 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 151 192 - -
Stsc241679g00029 882 Coils Coil 587 607 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 249 301 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 454 468 - -
Stsc241679g00029 882 SUPERFAMILY Homeodomain-like 728 776 IPR009057 -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 662 682 - -
Stsc241679g00029 882 SMART sant 726 774 IPR001005 -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 551 565 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 127 206 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 690 706 - -
Stsc241679g00029 882 Pfam Myb DNA-binding like 720 803 IPR039467 -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 471 486 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 436 624 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 1 75 - -
Stsc241679g00029 882 MobiDBLite consensus disorder prediction 802 872 - -
Stsc241679g00029 882 ProSiteProfiles SANT domain profile. 729 773 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241679g00029 Stsc-Chr241679 155781 163435 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc241679g00029 Myb_DNA-bind_7 6.2e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241679g00029 K15198 - gmx:100792788 710.294