Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241679g00003 ATGGCATCAGAGAAGAAGCTTGCGAACCCAATGAGGGAAATCAAAGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGCGAGAGCGGTGATCGTCTCACCAGAGCTGCCAAGGTCTTGGAACAGCTCAGCGGCCAAACCCCTGTCTTCTCAAAGGCTAGGTACACTGTGCGTTCATTTGGAATTAGGCGTAATGAAAAGATTGCTTGCTATGTGACCGTTAGGGGCGACAAGGCCATGCAGCTCCTTGAGAGTGGGTTGAAGGTCAAGGAGTATGAGCTGCTTAGGAGGAATTTCAGTGATACTGGCTGCTTTGGTTTTGGAATCCAGGAGCATATCGATCTCGGCATCAAGTATGATCCTTCCACTGGTATCTACGGCATGGATTTTTTTGTCGTCTTAGAGCGTGCTGGTTACCGTGTGGGTAGGCGTAGGAGATGCAAGTCCCGTGTTGGAATTCAGCACAGGGTCACCAAGGAGGATGCAATGAAGTGGTTTCAAGTTAAGTATGAAGGAGTTATTCTTAACAAGTCCCAACAAATTGTATGA 546 0.4835 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERAGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241679g00003 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Stsc241679g00003 181 Gene3D - 2 177 IPR022803 -
Stsc241679g00003 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Stsc241679g00003 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Stsc241679g00003 181 SUPERFAMILY RL5-like 9 173 IPR022803 -
Stsc241679g00003 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Stsc241679g00003 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Stsc241679g00003 181 FunFam 60S ribosomal protein L11 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241679g00003 Stsc-Chr241679 12403 13858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241679g00003 1 181 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 93.923 7.88e-128 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241679g00003 K02868 - gmx:100810082 339.347