Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241679g00001 ATGGAAAATCCAACTATCAGCACCATGCAAGAAGGTAACAATAATGAAAATGTGATGGCGCCTCCATCTTATCGGGGAGTTCGGAAGCGAAAATGGGGCAAATGGGTGTCCGAAATTCGCGAACCGGGGAAGAAAACCAGGATATGGTTAGGGAGCTATGAGCTACCCGAAATGGCGGCTGCGGCCTATGACGTGGCAGCGTTGCACCTTAGAGGCCACGCCGCTAGGCTCAACTTCCCCGAATTGGCTGAGAGTATGCCTCGGCCAGCGAGTTCACGAGCCGAGGACGTGCAAGCCGCAGCACAGCAAGCAGCATTGAGGTTCAAAACTCCTATTATATCATCCGAAAGCGAGGTAGGTAGTGCCCTTAATAAAAAGGGCACTGTCCTACCTGTAAGGGTAGGGTTGTCCCCTAGCCAAATTCAGGCGATTAATGAATCTCCACTGGACTCGCCAAAGATGTGGATGCGAATGGCTGAGGCACTCATGTTTGGCTTCCATGATCATAATCAGCATCATGATGATTGTTACGATGATTATTATGATTATGATTATGGTATGCTGGAGTTGAGTGGATGGGAAGAAATTGAACATACTTCTTTTTGGGACTCATGA 615 0.4846 MENPTISTMQEGNNNENVMAPPSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYELPEMAAAAYDVAALHLRGHAARLNFPELAESMPRPASSRAEDVQAAAQQAALRFKTPIISSESEVGSALNKKGTVLPVRVGLSPSQIQAINESPLDSPKMWMRMAEALMFGFHDHNQHHDDCYDDYYDYDYGMLELSGWEEIEHTSFWDS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241679g00001 204 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Stsc241679g00001 204 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241679g00001 204 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Stsc241679g00001 204 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Stsc241679g00001 204 MobiDBLite consensus disorder prediction 1 22 - -
Stsc241679g00001 204 Pfam AP2 domain 22 73 IPR001471 GO:0003700|GO:0006355
Stsc241679g00001 204 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Stsc241679g00001 204 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Stsc241679g00001 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 122 - -
Stsc241679g00001 204 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Stsc241679g00001 204 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Stsc241679g00001 204 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241679g00001 Stsc-Chr241679 7022 7651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241679g00001 15 203 AP2-EREBP Transcription Factor Family AT1G71450 47.619 4.97e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241679g00001 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241679g00001 - - gmx:100788567 225.328