Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241678g00023 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAGAACACCGAAGATGAGATCCTGAAAGCAGCTGTTATGAAATATGGGAAGAATCAATGGGCGAGAATCTCTTCCCTTTTGGTTCGTAAATCCGCTAAGCAATGCAAGGCTCGCTGGTACGAATGGCTCGATCCTTCTATCAAGAAGACCGAGTGGACGAGAGAAGAGGATGAGAAGCTGCTACATCTTGCGAAGCTTATGCCCACGCAGTGGAGAACGATTGCTCCCATTGTAGGACGTACCCCTTCCCAGTGTCTTGAGCGCTACGAGAAACTCCTTGACGCAGCGTGTGTAAAGGATGAGAACTATGAACCTGGCGATGATCCTCGGAAGTTGCGTCCTGGGGAGATTGATCCAAATCCAGAGTCAAAACCCGCACGCCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCGCGAGCCAGGTTAGCCAACACGAAAGGAAAGAAGGCGAAAAGGAAAGCCAGGGAGAAACAGCTAGAGGAAGCCAGAAGGCTTGCTTCTTTACAGAAGAAAAGAGAACTGAAGGCTGCGGGAATTGATGTTAGGCAGCGAAGGAGAAAAAGGAAAGGAATTGACTACAATGCAGAAATCCCTTTCGAGAAAAGGCCTCCTCCAGGGTTTTTTGACGTTGCTGATGAAGACAGACCCGTGGAACAGCCCCAATTCCCTACTACAATAGAAGAACTTGAGGGTAAAAGAAGGATTGATGTCGAGGCACAGTTAAGAAAGCAAGACATTGCAAAAAATAAAATTGCACAGAGGCAAGATGCCCCATCTGCTATACTACATGCAAATAAGTTGAATGATCCAGAAACAGTAAGGAAACAAACCAAACTCATGCTTCCGCCACCCCAGATTTCTGACCAGGAACTGGATGAAATTGCAAGGATGGGTTATGCCAATGACCTAGCTGGGAGTGATGAACTTGGAGAAGGTAGTGCTGCAACACGTGCTCTTCTGGCAAATTACGCGCAAACACCTGGCCGAGGAATGACTCCTTTAAGAACCCCTCAGCGAACTCCAGCTAGTAAAGGAGATGCTGTCATGATGGAAGCTGAAAACCTGGCTAGGTTGAGGGAGTCCCAGACACCATTATTAGGGGGAGAAAACCCGGAGTTGCATCCTTCGGATTTTACTGGGGTCACTCCTAAGAGAAAAGAGGTTCAGACCCCTAATCCAATGTTGACTCCCTCCGCAACTCCTGGAGGTGTAGGGCTCACTCCAAGAATTGGCATGACACCTGCGAGAGATGGTTACGCTAGCATGACACCAAGGGGAACTCCTCTCAGGGATGAGCTACGTATTAATGAGGACGTGGATATGCATGAGCGCGCCAAACTTGAGCTACAAAGAGCTGAACTAAGACGAAGTTTGCGCTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATTGTCATGCAGCCCATTCCCGAAGATGCTGAAGAACCTGAGGAGAAGATTGAAGAGGACATGTCAGATAGAATAGCTAGAGAAAAAGCAGAAGAAGAGGCAAGGCAACAGGCATTACTTAGGAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTCGGCCTCCTGCTGCATCGTTGGAGCTTATAAGAAATTCTTTAATCAGAGCTAACGAGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATAAGAAGGGAGCTTCTTGCATTGCTGGAGCATGACAATGCTAAGTATCCGCTTGACGAGAAAGTAACTAAGGAGAAAAAGAAAGGATCTAAGCGTGCAGTAAATGAGCCTGTTGTTCCGGTGATAGAAGAATATCAGGAAGAGGAGATGAAAGATGCTGATAAGTTGATAAAAGATGAGGCCCATTATCTTCGTGTAGCACTGGGACATGAAAACGAACCCCTTGACGAATTCATTGAAGCACACAGGACTAGCCTGAACGATCTCATGTTCTTTCCAACCCGCAATGCCTATGGTCTTTCAAGTGTTGCTGGAACCACGGAAAAGCTGGCAGCTTTGCAGAATGAGTTTGATAATGTGAGGAAAAAGTTGGACAATGGCAAGGAGAAAATTGTAAAGCTTGAGAAGAAGGCAATACTCCTGACTCAAGGCTATGAGATGAGAGCCAAAAACAGCCTTTGGCCACAAATTGAGTCGACTTTCAAGCAAATGGACATAGCTGCAACCGAATTAGAATGCTTTGAAGCTTTGCAAAAGCAGGAGACATTAGCCGCATCCCACAGGATAAACGATCTAAGGGAGGAAGTACAGAAGCAAAAGGAACTTGAGAGAACTTTGCAACATAAGTATGGGAATCTTATGGAGGAGTTGGAAAGGATACAAAATGTCATGGAACAATACAGGGTACAAGCAAAACAGCAAGAAGAAATCGAGGCAAATAATCGCGCTAACGAGTCAACCGAGATTGATGCTGACAAAACTGGTGCACAGGATTTAGAGAATTCTAAAGCTGTGCCTCAAGCAGAAGAAAAGGAAACTTCTATAGCAACTGATCTATCTCGTGATGAAACTGAAACTGCCATTATGCAAGACCAGATTACTGCTAGCCAGAAAAACGACATGGATGTGGATTTTGTTATGAAGCAAACAACAGATGACCCTAATGTGAAACTGCCAGATGCTATGCATGCTGCCGAGGTTGATACTGGAAAAATGGAAGCTACCATCACTGATGGTGACATTGATAACGGTAAGACCTCATTAGACGAGGGTGCTACAGTAGGAAATGAGGTGGAGAAAGATGTATCTATGGATGCTGAAAACTCACATGAGGATGATGATGAAGGGGAAAAGACGCAGGTTGCTGATAGCAACTAG 2889 0.4552 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDVRQRRRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPQFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKQTKLMLPPPQISDQELDEIARMGYANDLAGSDELGEGSAATRALLANYAQTPGRGMTPLRTPQRTPASKGDAVMMEAENLARLRESQTPLLGGENPELHPSDFTGVTPKRKEVQTPNPMLTPSATPGGVGLTPRIGMTPARDGYASMTPRGTPLRDELRINEDVDMHERAKLELQRAELRRSLRSGLGSLPQPKNEYQIVMQPIPEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIRANEDKSSFVPPTSIEQADEMIRRELLALLEHDNAKYPLDEKVTKEKKKGSKRAVNEPVVPVIEEYQEEEMKDADKLIKDEAHYLRVALGHENEPLDEFIEAHRTSLNDLMFFPTRNAYGLSSVAGTTEKLAALQNEFDNVRKKLDNGKEKIVKLEKKAILLTQGYEMRAKNSLWPQIESTFKQMDIAATELECFEALQKQETLAASHRINDLREEVQKQKELERTLQHKYGNLMEELERIQNVMEQYRVQAKQQEEIEANNRANESTEIDADKTGAQDLENSKAVPQAEEKETSIATDLSRDETETAIMQDQITASQKNDMDVDFVMKQTTDDPNVKLPDAMHAAEVDTGKMEATITDGDIDNGKTSLDEGATVGNEVEKDVSMDAENSHEDDDEGEKTQVADSN 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241678g00023 962 FunFam CDC5 cell division cycle 5-like 5 59 - -
Stsc241678g00023 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Stsc241678g00023 962 FunFam CDC5 cell division cycle 5-like 60 120 - -
Stsc241678g00023 962 Coils Coil 167 187 - -
Stsc241678g00023 962 SMART sant 58 105 IPR001005 -
Stsc241678g00023 962 SMART sant 6 55 IPR001005 -
Stsc241678g00023 962 Pfam Myb-like DNA-binding domain 10 70 - -
Stsc241678g00023 962 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 907 962 - -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 815 834 - -
Stsc241678g00023 962 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Stsc241678g00023 962 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 812 860 - -
Stsc241678g00023 962 Gene3D - 60 114 - -
Stsc241678g00023 962 Gene3D - 5 59 - -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 113 150 - -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 380 422 - -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 931 962 - -
Stsc241678g00023 962 Pfam pre-mRNA splicing factor component 406 652 IPR021786 -
Stsc241678g00023 962 Coils Coil 766 814 - -
Stsc241678g00023 962 CDD SANT_CDC5_II 55 106 IPR047240 -
Stsc241678g00023 962 MobiDBLite consensus disorder prediction 399 413 - -
Stsc241678g00023 962 Coils Coil 680 714 - -
Stsc241678g00023 962 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 801 IPR047242 GO:0000398|GO:0000974
Stsc241678g00023 962 CDD SANT 10 53 IPR001005 -
Stsc241678g00023 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241678g00023 Stsc-Chr241678 194584 202154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241678g00023 1 823 MYB-Related Transcription Factor Family AT1G09770 75.030 0.0 1209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241678g00023 Myb_Cef 8.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241678g00023 K12860 - gmx:100790369 1451.8