Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241678g00013 ATGTCTTCATCTTTTCCTGTTCTTCCTACATCCGCATCGCAGGCTTCATCGATAAATTCCAACATCAGAAGTGTTGGTCACATGTTCTCAACCCCTGCTGATTTCCCTGATGATGGCATGCCTTTTCCCACAGCTTCAGAGATCCATTCAACAGCGCAAGATTCTCACCCGCCGCTGCAACAAATTGATGATGTTTCCTGGGGAGCAGATCTGTTTGACAATATTCTTCAGTTTCCTGATAATAATAACAATGTTCCTTTCCAGAATGATCATACAGTGTATAGTGCTCCTGCATACACATCCAATGATATTCCAAAGGCGGTCGATTTTGAATGGGTTGATCGCCTCATGTCAGAGGACGATCCTCTTCCGCCGAATTGGAACCAGTTTGTTGGTGATAATAATGTAGCAGAGCCTAAATCAAAGGAAAGTCAGGTATCAGCAATACAGCAGCAAGTACCATCTCTTGAAGCTAACGGTCTTCCGGATGCGGTCCCAACTGCGCCACAAACTAAGCAAAGAATGCGTTGGACTCCAGAGCTTCATGAGGCCTTTGTGGAGGCAGTGAATCAGCTTGGTGGAAGTGAGAGGGCTACTCCAAAGGGTGTCTTGAACCTAATGAAAGTTGAAAGCCTTACCATATATCATGTGAAAAGCCACCTTCAAAAATATAGAACTGCCAGATACAAACCTGAGCCATCAGAAGGAGCTCCTGAGAAAAGGTCGACGGATTCAATAGAAGAAATGAAGCCTCTAGACTTAAAAACGAGTAAGGGGATAACCGAGGCATTGCGGTTGCAGATGGAACTTCAAAAGCGGCTTCATGAACAACTTGAGATACAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAGCAGATAGAGGGCTCCTCCTCTGCTCCGCTATCAAGCGCGGGGCAACATACAAATGAAAATTCAGAACCCAGGGATGACAACGATAATAAACGTGAACCAGGAGACGAGCAGCTAGTTGCGCCTCCCTCGAAACGGGTTAAAAGTTGA 1050 0.4514 MSSSFPVLPTSASQASSINSNIRSVGHMFSTPADFPDDGMPFPTASEIHSTAQDSHPPLQQIDDVSWGADLFDNILQFPDNNNNVPFQNDHTVYSAPAYTSNDIPKAVDFEWVDRLMSEDDPLPPNWNQFVGDNNVAEPKSKESQVSAIQQQVPSLEANGLPDAVPTAPQTKQRMRWTPELHEAFVEAVNQLGGSERATPKGVLNLMKVESLTIYHVKSHLQKYRTARYKPEPSEGAPEKRSTDSIEEMKPLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQIEGSSSAPLSSAGQHTNENSEPRDDNDNKREPGDEQLVAPPSKRVKS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241678g00013 349 FunFam Myb family transcription factor 171 229 - -
Stsc241678g00013 349 Pfam MYB-CC type transfactor, LHEQLE motif 260 302 IPR025756 -
Stsc241678g00013 349 MobiDBLite consensus disorder prediction 300 349 - -
Stsc241678g00013 349 MobiDBLite consensus disorder prediction 320 339 - -
Stsc241678g00013 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 229 IPR017930 -
Stsc241678g00013 349 Pfam Myb-like DNA-binding domain 174 225 IPR001005 -
Stsc241678g00013 349 SUPERFAMILY Homeodomain-like 170 226 IPR009057 -
Stsc241678g00013 349 Coils Coil 261 281 - -
Stsc241678g00013 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 226 IPR006447 GO:0003677
Stsc241678g00013 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 161 322 IPR044848 GO:0003700
Stsc241678g00013 349 MobiDBLite consensus disorder prediction 301 319 - -
Stsc241678g00013 349 Gene3D - 171 230 - -
Stsc241678g00013 349 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241678g00013 Stsc-Chr241678 81722 85951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241678g00013 19 348 G2-like Transcription Factor Family AT4G28610 43.697 1.01e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc241678g00013 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241678g00013 - - adu:107465812 572.007