Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241678g00006 ATGGCACCTAATCCCAGATTTACCAATGCCTATAATGCTATGAGGACATTAGGCATTTCTGATGATGAGGTGAGGCCTATCTTGAAAAGGTTGCTCAAGGAGTTTGGTAGTAATTGGGAGCTTATTGAAGAAGACAACTATGAAATACTGCTAGACGCATACTTTGAGTCCTTGGAACATAAGCAAGAAGAAGGTAAAGGGAAAGCTCCAATTAGCAATCATGACGAAGAAAGAGCTATACCAAAACTGCATTTAGTAAATGGCGATGACATGGTTTCATTAACCGATAACGAAGTACAAGTGTTGTCTATAGAAGACAATGAAATAGTTCCAAAGACTTCTGAAACGAAAATGATTAATAAGCCATCTCCATTATTACATCTTGGACCTCTTTCATCATATTTGAAAGGGCCATGCGATGATTTAAATGTAAATCGTCGTTTCAAATCTATATCAGCTCTCTACCAAAATACGCCAAGTCCCAATGGTGCCAATTTGACTATGGGCCCATGCCATGATGATTCAAATGTAAATCATCGTTTCAAATCTATATCAGATATTTATCAAAATGGGCCAAATCTCAATCATGCCAATTTGTCTAATAAGACACAACCAGCTATTGCTCATGAAAATAATCATGTTCAATTTCTAAATGACATAACAAAAGGTTCTGAAAAGGTTGAAATCTCACTAATAGATGAAACTGGAAGTGAGAAGTTGCCTAAGTTTAATTACATACCAAATAATATAACATACCAGAATGCTAATGTGAACATTTCACTTGCTCGCATTGCGGATGAAGATTGTTGTTCTGATTGTTCAGGAAACTGCCTTTCTTTGTCACTTCCTTGTGCATGTGCTAAAGAAACAGGTGGGGAGTTTGCTTATACTCCACAAGGCTTGTTGAAGAAAAAGTTCTTAAAACTCTGCATGTCTATGGCAACAAAACCTCAACATAATCATTTTGTGTATTGTCAAGAATGCCCCCTAGAAAGGTCTAGGAATAATGAGTGCATTCCTGAAGAATGCAAGGGTCATTTGGTTAGAAAGTTTATAAAAGAATGTTGGAGAAAATGTGGATGTGATATGCAATGTGGAAATCGTCTAGTGCAGAGAGGCATAACATGTAAACTACAGGTATTTTTTACTCGGGGAGGAAAGGGGTGGGGTGTTAGAACACTAGAAGATTTGCCGAAAGGGTGCTTTGTTTGTGAGTATGTGGGAGAAATATTAACGAATACAGAATTATATGAAAGGGTTTTACAGAATAGCAACAAGGATAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCAGAAAAGGTGTTAAACGATGAAGAGGCTTTGTGCTTAGATGCAACATATAATGGAAATATTGCAAGATTTATCAATCATAGATGTTTTGATGCGAATTTGATTGACATTCCAGTGGAAGTGGAGGTTCCTGATCGCCATTATTATCATATTGCTCTCTTTACTAATAGGAAAGTGAAAGCGTACGAAGAGCTGACATGGGATTATGGTATCGACTTTGATGATCATGAACACCCTATTAAAGCATTTCAATGCTGCTGTGGAAGTAACTTCTGTCGTGACAAGAAAAATAAAGGAACTGGATTGAAAGCTAAAAACAAAAGCTAA 1647 0.3704 MAPNPRFTNAYNAMRTLGISDDEVRPILKRLLKEFGSNWELIEEDNYEILLDAYFESLEHKQEEGKGKAPISNHDEERAIPKLHLVNGDDMVSLTDNEVQVLSIEDNEIVPKTSETKMINKPSPLLHLGPLSSYLKGPCDDLNVNRRFKSISALYQNTPSPNGANLTMGPCHDDSNVNHRFKSISDIYQNGPNLNHANLSNKTQPAIAHENNHVQFLNDITKGSEKVEISLIDETGSEKLPKFNYIPNNITYQNANVNISLARIADEDCCSDCSGNCLSLSLPCACAKETGGEFAYTPQGLLKKKFLKLCMSMATKPQHNHFVYCQECPLERSRNNECIPEECKGHLVRKFIKECWRKCGCDMQCGNRLVQRGITCKLQVFFTRGGKGWGVRTLEDLPKGCFVCEYVGEILTNTELYERVLQNSNKDRHTYPVTLDADWGSEKVLNDEEALCLDATYNGNIARFINHRCFDANLIDIPVEVEVPDRHYYHIALFTNRKVKAYEELTWDYGIDFDDHEHPIKAFQCCCGSNFCRDKKNKGTGLKAKNKS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241678g00006 548 SMART preset_2 217 360 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc241678g00006 548 SUPERFAMILY SET domain 227 533 IPR046341 -
Stsc241678g00006 548 FunFam SET-domain containing protein lysine methyltransferase family protein 220 535 - -
Stsc241678g00006 548 CDD SET_SETDB-like 241 510 - -
Stsc241678g00006 548 SMART set_7 376 516 IPR001214 GO:0005515
Stsc241678g00006 548 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 544 - -
Stsc241678g00006 548 Gene3D - 1 60 IPR043017 -
Stsc241678g00006 548 Pfam Pre-SET motif 220 368 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc241678g00006 548 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Stsc241678g00006 548 ProSiteProfiles Pre-SET domain profile. 273 373 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc241678g00006 548 ProSiteProfiles SET domain profile. 376 510 IPR001214 GO:0005515
Stsc241678g00006 548 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 548 IPR025776 -
Stsc241678g00006 548 Pfam SET domain 388 510 IPR001214 GO:0005515
Stsc241678g00006 548 Gene3D SET domain 220 535 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241678g00006 Stsc-Chr241678 48525 54396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241678g00006 352 533 C2H2 Transcription Factor Family AT2G23740 40.642 4.58e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241678g00006 Pre-SET 2.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241678g00006 - - aip:107615621 711.449