Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00056 ATGGATGGGGACGATGATAGTATGATGAGGCATCAGCAGCATTCCCTCAAGAAAGTGCAGGGGGCAAAGCTCCGCCTCATGTGCAGCTACGGAGGGAACATTATGCCCCACCATAACCATAACCATGACTCTCTGTCTCTCCTCCACTACGTGGGTGGCGACACTCGCATGGTGGCTGTGGAGCGCAACACCTCCCTCAAGGACCTCTCTGCTCGCCTCTCTAACACGTTTCTCCATGGACGTCCCTTCACCCTCAAGTACCAGCTCCCCGACCACCAACTTGACAACCTCATCACCGTCGTCACCGATGACGACCTCCAAAACATGATCCAAGAGTATGACCGCTTCGCTTCTTTGTCTCCTCCTCTGCGCCTCAGGCTCTTCCTCTTCCTCTCCAAACTTGACACCGCCGCTTCCATGGGTGCACTCCTCAATGATGCCAAGTCTGAGACGTGGTTCGTGGACGCTCTCAACAACTCCGGCATGATGAATAATATATCCCGTGTTGTTTCTGATTCTGCTGCTGTTGATGAATGCCTCCTCAGCCTCGCTGATGAACTCATCCCGGATCGTGATCAGCACAGCAAGGTCATGGACCACCATTTTGCACAACTTAAACTTGGGAATGCTGAATGCCATGATGATGATGATGAAGGTGAATACAGGAACAATAAGCCCCCTCCCCCTCCTACTTTTGCTGCTTATGGTTTGCCATCTCCTGATTCTGTTGTAAGTGATAGCAGCATTGCAAGTTCAATCTCAAAGGGGCTTTCCTCAAACACTAGTACTCAACATCACACCCTGCATCTAAATGGACAACAAGTGGATCCAAATCAGCAACAGCAGCAATTTGTGTACATCCAGCCTCAGCCTCACCCTCATGTTGCTGCATCCCCCACTGGGCAAGTGGCAATGTCATCCTACCACCACACACTTTATGCACCACAATCAAATCAACAGCATTACCCTGTTTACGTAATGCCACTTGACATTTCACAAGTGCCCACTAATTACCCCACTATGCTAACTACCCCAACCAATATACCTGACACTCATCCTGCATTTCTTCACCAACAACGCTATGTGCCTTTGCCTCATCATCCAATTGCAGTAGCCACACCTACCAATTATGCTGCTGCACCTAAGCAAGACCACCAACTACTATATTACACACAAACACAACCACAGCAGCACCAATCCAGTGCTCCACAAACCCTTCAGTACCAATCCATGACCCCACCAGCAGCTGCACTCTCGGATGTTTCCAAAGAGTTCCCTCTTTGA 1284 0.4977 MDGDDDSMMRHQQHSLKKVQGAKLRLMCSYGGNIMPHHNHNHDSLSLLHYVGGDTRMVAVERNTSLKDLSARLSNTFLHGRPFTLKYQLPDHQLDNLITVVTDDDLQNMIQEYDRFASLSPPLRLRLFLFLSKLDTAASMGALLNDAKSETWFVDALNNSGMMNNISRVVSDSAAVDECLLSLADELIPDRDQHSKVMDHHFAQLKLGNAECHDDDDEGEYRNNKPPPPPTFAAYGLPSPDSVVSDSSIASSISKGLSSNTSTQHHTLHLNGQQVDPNQQQQQFVYIQPQPHPHVAASPTGQVAMSSYHHTLYAPQSNQQHYPVYVMPLDISQVPTNYPTMLTTPTNIPDTHPAFLHQQRYVPLPHHPIAVATPTNYAAAPKQDHQLLYYTQTQPQQHQSSAPQTLQYQSMTPPAAALSDVSKEFPL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00056 427 CDD PB1_UP2 27 118 - -
Stsc241677g00056 427 SMART PB1_new 43 130 IPR000270 GO:0005515
Stsc241677g00056 427 PANTHER OS05G0427100 PROTEIN-RELATED 18 388 - -
Stsc241677g00056 427 MobiDBLite consensus disorder prediction 211 238 - -
Stsc241677g00056 427 Gene3D - 49 131 - -
Stsc241677g00056 427 MobiDBLite consensus disorder prediction 393 416 - -
Stsc241677g00056 427 Pfam PB1 domain 48 130 IPR000270 GO:0005515
Stsc241677g00056 427 MobiDBLite consensus disorder prediction 393 427 - -
Stsc241677g00056 427 SUPERFAMILY CAD & PB1 domains 46 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00056 Stsc-Chr241677 229633 231230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00056 22 159 MAP Kinase Kinase Kinase AT1G79570 35.971 7.74e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00056 - - ahf:112783394 428.328