Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00054 ATGCGTGTTGTTACAACTACAACAGTTGCAGAAGAACACATGAAAGGGAGAAGACCAAGAAAGCAGCACATGATGAGAGAAGAAACAGATCCAAGGTCAGCAAGGTGCAAGTCCAGCATTTCGTCTCTGCTGCTCTCCACATTCTCCAACAACAACAATGATGGCAGGAAAAAGAGCAACTTCTCAGCAGCGGGCACCTTGAGGGGACTGGGGTGCACGGCGGGGGCTTCGCAGGAGGTGTCGGTGCCGGCGGTGATCCGAAGTTCGGCGGAATGGGAAGGCAAGAAGGTGAGAAAGAAGAAGCACAAGGGAAAGGGAGGAGGAGGTGTGGATTTTCAACATGTATCTTGTTCTTCAAGACCCAAAATTGATGTTCACAAGATCAATCAGAGACAGGCACAGGTACATGCATATTCATCTTCTTGTTTGGGAAGGCGGAGTTTGAGTGTCAACCCAGAAACCATCTCGCTTCTCGACACCCATCCTACTCACCTCTTCACACCCCCCTCTGCCTCCTCCCATGCATACTATCGCCACCTTCCAGATCCTCACCCTCACCCTCAGATTATGATGCTTGAAGGAGGTGGTACTAGTATACTCATGGCGGGCAGAGGCAGATTAACCACACACGACGATCAATTCAGAGATTGGAGGCTTGATGTTGATAACATGTCCTATGAGCAATTGCTTGAGCTCGGCGACAGAATTGGTCATGTCAACACCGGGCTTAAAGAAAATGAGATGGGTGGCAACATAACCTACACCAAGCTTCAAATCTCAGACGATCAAGCAGACAAAACATGTACCATTTGCCAGGAGGAGTATGAAGCAGGCGACGAATTGGGGAGGTTACATTGTGACCACACCTATCACTTCCACTGCATAAAACAATGGGTTGCTCATAAGAATTTCTGTCCTGTTTGTAAGCAACAAGTTCTGCCTCGCAACGCCAACAACTGA 960 0.4865 MRVVTTTTVAEEHMKGRRPRKQHMMREETDPRSARCKSSISSLLLSTFSNNNNDGRKKSNFSAAGTLRGLGCTAGASQEVSVPAVIRSSAEWEGKKVRKKKHKGKGGGGVDFQHVSCSSRPKIDVHKINQRQAQVHAYSSSCLGRRSLSVNPETISLLDTHPTHLFTPPSASSHAYYRHLPDPHPHPQIMMLEGGGTSILMAGRGRLTTHDDQFRDWRLDVDNMSYEQLLELGDRIGHVNTGLKENEMGGNITYTKLQISDDQADKTCTICQEEYEAGDELGRLHCDHTYHFHCIKQWVAHKNFCPVCKQQVLPRNANN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00054 319 SUPERFAMILY RING/U-box 254 314 - -
Stsc241677g00054 319 Pfam Ring finger domain 267 309 IPR001841 -
Stsc241677g00054 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 319 IPR013083 -
Stsc241677g00054 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 83 313 IPR045191 GO:0061630
Stsc241677g00054 319 SMART ring_2 268 308 IPR001841 -
Stsc241677g00054 319 ProSiteProfiles Zinc finger RING-type profile. 268 309 IPR001841 -
Stsc241677g00054 319 MobiDBLite consensus disorder prediction 1 35 - -
Stsc241677g00054 319 MobiDBLite consensus disorder prediction 93 115 - -
Stsc241677g00054 319 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00054 Stsc-Chr241677 224543 226255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00054 207 313 C3H Transcription Factor Family AT2G15530 47.788 8.55e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00054 - - gmx:100788837 308.145