Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00053 ATGGGTAAGAAGAAGAAGAGGGTTTCGTCCAAGGTTTGGTGCTATTATTGCGATCGGGAGTTCGACGATGAGAAGATCTTGGTGCAGCATCAGAAGGCGAAGCACTTCAAGTGCCATGTGTGCCACAAGAAGCTGTCGACCGCCGGTGGTATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTTACCAAGGTCCCCAATGCGAAACCTGGTAGAGAGAGTACAGATATTGAAATCTATGGAATGCAAGGGATTCCACCCGATGTTTTGGCTGCTCATTATGGAGAAGAAGACGACGACGTTCCATCAAAGGCACCAAAGCTTGACATACCATCCACACAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGCTACACCATACCCTCCTCGGCCACCAATGTACAATCCAGCCATGCCTGTGCCCCCAAATGCTTGGGCTGTTCCACCTCGACCTGCTCAGCCATGGTATCCCCAACCTCCAGCTGTTTCAGTTCCGCCTCCTGCCCCTTACACACAACAGCCATTATTCCCTGTGCAGAATGTGAGGCCGCCATTGCCATCAACTGCTCCTCCTCCTCCTCCTCCTCCACTCCAAACTCAGGTTACTCCTCCTGGGCTGCCTTCATCTACACCTTCTGTCCCTGTTTCGCAACCTTTGTTTCCTGTCATTACAACAACTCAAACTGCTCCTCTGTCTTCAACTGCTCCATCCATAAATCCAGTCCTATCCTCAACTGCCCCTCTTGATTCACATTTGGGTGCCAACTCCCTTGTAAATGCTTATCAGGCAACAGGCCTTCCAGGTGGGACAGCAGGTAACTCACATTCCTATGCATCTGGTCCAAATACCGGTGGCCCTTCAATTGGACCTCCCCCTGTAATTGCAAACAAAGCTCCTGCACCCCAACCTGCTGCTAATGAAGTTTACTTAGTTTGGGATGATGAGGCTATGTCCATGGAGGAAAGAAGAATGTCTCTGCCAAAATATCAGGTTCATGATGAAACTAGCCAGATGAGCTCTATTGATGCAGCAATAGATAAGAGGATACTTGAAAGCAGGTTGGCTGGTCGCATGGCGTTCTAG 1089 0.5032 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEDDDVPSKAPKLDIPSTQLVGGMVPPPLATPYPPRPPMYNPAMPVPPNAWAVPPRPAQPWYPQPPAVSVPPPAPYTQQPLFPVQNVRPPLPSTAPPPPPPPLQTQVTPPGLPSSTPSVPVSQPLFPVITTTQTAPLSSTAPSINPVLSSTAPLDSHLGANSLVNAYQATGLPGGTAGNSHSYASGPNTGGPSIGPPPVIANKAPAPQPAANEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00053 362 Gene3D Classic Zinc Finger 1 66 - -
Stsc241677g00053 362 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Stsc241677g00053 362 MobiDBLite consensus disorder prediction 166 214 - -
Stsc241677g00053 362 SMART c2h2final6 12 35 IPR013087 -
Stsc241677g00053 362 SMART c2h2final6 36 59 IPR013087 -
Stsc241677g00053 362 MobiDBLite consensus disorder prediction 166 213 - -
Stsc241677g00053 362 PANTHER ZINC FINGER PROTEIN 207 1 362 - -
Stsc241677g00053 362 CDD SUF4-like 13 92 - -
Stsc241677g00053 362 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Stsc241677g00053 362 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Stsc241677g00053 362 MobiDBLite consensus disorder prediction 274 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00053 Stsc-Chr241677 219683 221898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00053 1 342 C2H2 Transcription Factor Family AT1G30970 64.706 1.01e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241677g00053 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00053 - - gmx:100789368 526.168