Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00051 ATGAAGATGGGGCTTGGCTTGAAGATGAAGATTCAGGAGATGCAGATGGTGATGCAGAAGCACCATGTACCTGTGGCTTTGAGGATGCATGACCAAAATGGGACTCAAAAGAGGAAATACACTTGGATTCAAAAGAACAGGGCTTTGATTCCACTCTTTCTGCTTGTGTGGATCCTTGTCATGTCTTACATTAGTTGGTTTATCTTCAACAAAATGGATGCTGACGACAAGGTTAGGAGGAAGGAGGGTCTTGTAACCCAGTGCGACCAAAGGGCTAGAATGCTCCAAGATCAATTTAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGACACCCTTCTGCCATTGATCAGGGAACCTTTGCCGAATACACGGCGAGGACAGCATTTGAAAGGCCATTGTTGAGTGGGGTGGCTTATGCACAAAGAGTGGTACACTCTGAGAGGGAAAGATTTGAGAAGCAACATGGATGGATTATAAAGACAATGGAAAGAGAGCCCTCACAGGTCAGAGACGAGTATGCACCTGTCATCTTTGCCCAGGAAACCGTTTCCTACCTTGAATCTATTGATATGATGTCTGGCAAGGAGGACAGAGAAAACATTTTAAGGGCGAGGGCCACTGGGAAAGCTGTTCTCACAAGCCCTTTTAGGCTGTTAGGGTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTTCCTCCAAATCCAACACTGGAAGAACGCATTAAAGCAACGGCAGGATATGTGGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTCGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATGTGACAAACTCTTCTACCCCCCTGATTATGTATGGTAGCCAATATGAAAAAGGTGACATGTCACTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCGTATAGGAATCACACAATGATATGTAGGTATCATCAGAAGGCTCCAACAAATTGGATGGCACTTACCACAGTATTCCTATTCTTTGTGATCCTCTTATTAATTGGTTACATTTTGTATGGTGCCGGAAATCATATTGTCAAAGTAGAGGATGATTACCAGGAAATGGAGGAACTGAAAGTGCGCGCGGAAGCAGCCGATGTTGCCAAGTCACAGTTTCTAGCTACTGTGTCGCATGAAATTAGAACTCCCATGAATGGAATTTTAGGAATGCTTGGTCTGCTTCTAGATACAGAGTTGACTTCAACCCAGAGAGATTATGCTCAGACAGCTCAAGCATGTGGAAAGGCACTGATAACATTAATAAATGAGGTGCTTGACCGTGCTAAAATTGAAGCTGGCAAGTTAGAGCTTGAAGCAGTTCCATTTGACATCCGTTCCATTCTTGATGACGTCCTTTCACTTTTTTCTGAGAAGTCTAGGCATAAAGGTTTAGAGTTGGCAGTGTTTGTCTCTGATAAAGTTCCGGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTCACAGAACGTGGACATATATTTGTCAAAGTCCATCTAGCCGAAAGTAGAAAGCCGACGACAAATGGAACTTGTGAGACTTATCTAAATGGAGGAACAGATGAAGTTGGGCATATATCCGGTGGTTGTAATTCGAAAACCCTGAGTGGGTGTGAAGCAGCCGATGAACGGAACAGCTGGGAGAATTTCAAGCATCTAATTGCTGATGAGGAATTTTTCTCTGATTCTGTCAAGAAGGTGGCCTGCAGTGAAGCTTATGAGCAAGTTAGATTAATGGTGTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAGGACAGGATTTTTATGCCTTTTGTGCAGGCAGATAGCTCGACATCGCGACACTATGGTGGTACTGGGATTGGCTTGAGTATCAGTAAGTGTCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGACCCCAAGTTGGGAGTACATTTTCATTTACTGCAAACTTTGGAACGTACAAGAAAAATTCTAAAACAGATGTCAAGAAACTTAATGTGGAAGATCTTCCTTCTAGTTTTAGAGGGCTTAAAGCTATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTCACAAGATACCATTTGAAGAGACTTGGTATTCAAGCTAAAGTAGCAAACCACATTAAAAAGGCTGTTTCCTTATGTGGCAAGAATGGTTCTTTGGCTTCAGAATTATTTCAGCCTGACATTGTTTTTGTGGAGAAGGACTCATGGTTTTCCGGAGAGGATGGAGTTTTCAATATCTGGCAACTAGATTGGAAACAGAATGGTCATATGTTGAAGATACCCCAAATGATCCTTCTTGCGACCAATATTAGTAATGCCGAATTTGATAAAGCTAAAGCAACAGGTTTCAGCGACACGGTGATCATGAAACCTCTGAGGTCTAGTATGGTGGCTGCTTGTCTACAGCAAGTTCTGGGGATGGGAAAGAAGAAGCAGCTAGGAAAAGACATGCCAAATGCCCCAACTTTCCTAAAAAGCCTTCTTTGTGGAAAGAAAATGTTAGTGGTTGATGACAACATTGTAAACAGGAGGGTTGCTGCGGGTGCATTAAAGAAGTTTGGAGCTGATGTTAAGTGTGCAGAAAGTGGCAAAGCTGCTCTTGAAATGCTTCAGTTGCCTCACAATTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAGGCAACTCGTCGAATTCGAATGATGGAGAGCAAGGCGAACAAGCAAGAGATGAATGGTGAATGTGAAGAAGGAAACACGAAGAGAAGTAGTAAGCACCACTTGCCCATATTGGCTATGACAGCTGATGTAATCCATGCTACTTATGAAGAGTGCTTGAAATGCGGGATGGATGGATATGTGTCAAAGCCCTTTGAGGAAGAAAATCTCTATCAAGCAGTTGCAAAGTTTTTCAACTCAAACCATATCTCACCAGCTTCATGA 3057 0.4256 MKMGLGLKMKIQEMQMVMQKHHVPVALRMHDQNGTQKRKYTWIQKNRALIPLFLLVWILVMSYISWFIFNKMDADDKVRRKEGLVTQCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRHPSAIDQGTFAEYTARTAFERPLLSGVAYAQRVVHSERERFEKQHGWIIKTMEREPSQVRDEYAPVIFAQETVSYLESIDMMSGKEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTLEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNSSTPLIMYGSQYEKGDMSLVHESKLDFGDPYRNHTMICRYHQKAPTNWMALTTVFLFFVILLLIGYILYGAGNHIVKVEDDYQEMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELTSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAESRKPTTNGTCETYLNGGTDEVGHISGGCNSKTLSGCEAADERNSWENFKHLIADEEFFSDSVKKVACSEAYEQVRLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTANFGTYKKNSKTDVKKLNVEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANHIKKAVSLCGKNGSLASELFQPDIVFVEKDSWFSGEDGVFNIWQLDWKQNGHMLKIPQMILLATNISNAEFDKAKATGFSDTVIMKPLRSSMVAACLQQVLGMGKKKQLGKDMPNAPTFLKSLLCGKKMLVVDDNIVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRMMESKANKQEMNGECEEGNTKRSSKHHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFNSNHISPAS 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00051 1018 SMART CHASE_2 121 306 IPR006189 -
Stsc241677g00051 1018 FunFam Histidine kinase 4 366 457 - -
Stsc241677g00051 1018 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 506 687 IPR003594 -
Stsc241677g00051 1018 Pfam Response regulator receiver domain 874 941 IPR001789 GO:0000160
Stsc241677g00051 1018 CDD REC_hyHK_CKI1_RcsC-like 874 1005 - -
Stsc241677g00051 1018 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 448 685 IPR036890 -
Stsc241677g00051 1018 Gene3D - 709 849 - -
Stsc241677g00051 1018 Gene3D - 866 1015 - -
Stsc241677g00051 1018 ProSiteProfiles Response regulatory domain profile. 872 1009 IPR001789 GO:0000160
Stsc241677g00051 1018 SMART HisKA_10 394 459 IPR003661 GO:0000155|GO:0007165
Stsc241677g00051 1018 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 379 460 IPR036097 GO:0000155|GO:0007165
Stsc241677g00051 1018 SUPERFAMILY CheY-like 870 1010 IPR011006 -
Stsc241677g00051 1018 FunFam Histidine kinase 4 125 340 - -
Stsc241677g00051 1018 ProSiteProfiles Histidine kinase domain profile. 401 690 IPR005467 -
Stsc241677g00051 1018 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 1006 - -
Stsc241677g00051 1018 PRINTS Bacterial sensor protein C-terminal signature 615 629 IPR004358 GO:0016310|GO:0016772
Stsc241677g00051 1018 PRINTS Bacterial sensor protein C-terminal signature 633 643 IPR004358 GO:0016310|GO:0016772
Stsc241677g00051 1018 PRINTS Bacterial sensor protein C-terminal signature 674 687 IPR004358 GO:0016310|GO:0016772
Stsc241677g00051 1018 PRINTS Bacterial sensor protein C-terminal signature 650 668 IPR004358 GO:0016310|GO:0016772
Stsc241677g00051 1018 SUPERFAMILY CheY-like 711 846 IPR011006 -
Stsc241677g00051 1018 Gene3D CHASE domain 125 340 IPR042240 -
Stsc241677g00051 1018 Gene3D - 458 694 IPR036890 -
Stsc241677g00051 1018 ProSiteProfiles Response regulatory domain profile. 715 845 IPR001789 GO:0000160
Stsc241677g00051 1018 Coils Coil 371 391 - -
Stsc241677g00051 1018 Gene3D - 72 124 - -
Stsc241677g00051 1018 CDD HATPase_EvgS-ArcB-TorS-like 511 688 - -
Stsc241677g00051 1018 FunFam Histidine kinase 3 866 1013 - -
Stsc241677g00051 1018 SMART REC_2 871 1005 IPR001789 GO:0000160
Stsc241677g00051 1018 ProSiteProfiles CHASE domain profile. 121 333 IPR006189 -
Stsc241677g00051 1018 Pfam CHASE domain 124 304 IPR006189 -
Stsc241677g00051 1018 Pfam His Kinase A (phospho-acceptor) domain 394 459 IPR003661 GO:0000155|GO:0007165
Stsc241677g00051 1018 CDD HisKA 394 455 IPR003661 GO:0000155|GO:0007165
Stsc241677g00051 1018 Gene3D - 368 457 - -
Stsc241677g00051 1018 SMART HKATPase_4 506 690 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00051 Stsc-Chr241677 203135 208499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00051 37 1018 Histidine Kinase Gene Family AT2G01830 70.374 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc241677g00051 HATPase_c 8e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00051 K14489 - gmx:100818481 1650.18