Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00046 ATGATGAGGACGTTGAATTCCGATCATGAGGCCACAACACAGGAGGCATTGGAGCTTCTGATCGAGCTTGCCGGTATGGAGCCGAGGTTCCTCCGGCAGCAACTTGTGGTTGGTGTCGGAGCCATCCTGCAGATTGCTGGCAGAGTCGCTGGAGGAAGGGAGGTGCCATTTGGTTTTGGGGAGAAGACCACCAGCTCACTCCAAACCCTAATCCCTCTGAAGAAGCAGAAGAAGGAGAAAGAGGAAGAGAGCAAAACCAAAATGGCGCAGCAACCACTGGAGCAGGTGCAGTGCTTCGGCCGCAAGAAGACCGCCGTTGCCGTCACATACTGCAAGCGAGGCCGCGGTCTCATCAAGATCAACGGTTGCCCAATCGAGCTGGTGGAGCCTGAGATCCTCCGTTTCAAGGCGTTCGAGCCAATCCTTCTGCTCGGAAGGCAACGATTCGCCGGCGTTGACATGCGCATCCGCGTGAAGGGAGGAGGACACACTTCTCAGATCTACGCCATAAGGCAGAGCATAGCGAAGGCTCTTGTTGCGTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAGATCAAGGATATTCTTGTCAGGTACGACCGAACCCTCCTCGTCGCCGATCCAAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGTGCCAGGTTCCAGAAGTCCTACCGTTAA 699 0.5608 MMRTLNSDHEATTQEALELLIELAGMEPRFLRQQLVVGVGAILQIAGRVAGGREVPFGFGEKTTSSLQTLIPLKKQKKEKEEESKTKMAQQPLEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00046 232 ProSitePatterns Ribosomal protein S9 signature. 160 178 IPR020574 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00046 232 Gene3D - 85 232 IPR014721 -
Stsc241677g00046 232 Pfam Ribosomal protein S9/S16 100 232 IPR000754 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00046 232 SUPERFAMILY Ribosomal protein S5 domain 2-like 95 232 IPR020568 -
Stsc241677g00046 232 PANTHER RIBOSOMAL PROTEIN S9 74 229 IPR000754 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00046 232 FunFam 40S ribosomal protein S16 88 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00046 Stsc-Chr241677 168751 170856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00046 88 232 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 87.671 7.46e-93 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00046 K02960 - gmx:100779794 282.337