Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00039 ATGTTGTGGAATAGGAAGCATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACAAGCAACGGCTTTACCACTCATCTTTACTCAGCCTTATGCGCTAAAGGGATCAAGACTTACATGCATGGCATGCTCGCTGCCGCTGATGATGGAGTAGTACAAGAGAAGCATGCAATTCAAGAATCAAATATCTATGTCATCATTTTCTCTCAACACTATGCCTATTCCGCGCGCTGTTTGGACCAACTCACACATATTCTGGATTGCAAGCACAGATATGGAAGGGATGTCATACCAGTTTTCTATAACATGGATCCATCAATTGTTAGGAATCAAACGGGCACTTATGCTGATGCCTTTGTTATGCATCAACAACCCTTTGGAGATCAAGTGCAGACGTGGAAGCTTGCCCTAACTCAACTAGCTGAATCATCGCCCACTCATTCAAATATAAATAGTGCCAGGCCTGATTACATACTTGTTGAAGAAATTGTTCAACACATTTGGAGGAGATTGAAACGCAATTACTCAACTGATTACCAAGGACTGGTTGGAATTCAAGACCATGTTGCACAAATCCAGTCCTTGTTGCATCTTGAGTTAGAAACCGTTCGGATCATAGGAATATGCGGAATTGGAGGAATAGGCAAGACAACCATTGCTGGTGCCTTGTATCATGAATTGTCATCCCAATTCAGTTTCAGCACTTTTGCTTTAAGTGTTCAACAACAAATAGAAAGCCATGGGATGCAACATACACAAAGCAAATATATAGCAGAGCTTCTAGAAGAAAAAATGGCCGCAGACAATTTGGGATTGAGTGTGTTAACAGAAAAGCTTAAAGTGGCCAAGGTTCTCCTCATTCTCGATGATATGAACAATTCAGCTCAAATAAGAGATTTGATTGGAGGACATGGTAGCTTCGGCCCGGGAAGTAGGATCATTGTGACAAGTAGGGACTTGCAAACGCTCAAGAATGCTGGGGTTGATGAGATATATGAAACTAAGGAGATGAGCTTTCAAGATTCTCTGCAACTATTTAGTTTAAATGCCTTCAAACAAAAGAATCCGATAGAAAATTATGTGAGCTTATCAAGCAAGGTGTTAAATTACGCAAATGGGATTCCATTGGCTCTCAAAGTTTTAGGCTCAATGCTTCATGGTAGCACAGAGGGAGAATGGGAATGTCTATTGCAAAAGCTTGAAAAGATTCCCAATCCTGAAATGTATAATTTGTTGAAACTGAGTTATGATGGACTTAATGAAGAGCAGAAGGACATGTTTCTTGACATAGCTTGCTTCTATAAAGGAGGTCATGATGTGAATACTGTAAAACAAGCATTTGATAGCTGTGGTTTCAATGCTGCTACTGGACTGAGAGTTCTCAGTGATAGAGGGCTCATATCTGTGTTGAGGGGTGAACTAATGATGCATGATCTAATACAGGAAATGGGCCAAGAAATTGTTCGTAACCAGTATGCCGGTGAACCTGGAAAACACAGTCGATTATGGAAGCATGATGACATTTATCATGTTCTAAGAGAAAACAAGAAGTTACCAAATTTGAAAAGACTTGACCTCAGTGGTTCCAAGAACCTTGTTCAAGTACCGGACCTTTGCCACTGCCCAAATATTGAAGAAATAATTCTCAGCCACTGCAAAAGCTTGGTTCGAGTTTACTCCTCAGGTTTCCTTAACAAGCTTAACTGTGTATGGCTAAATGGCTGCACTGAGCTTAGAAATCTAAACCTTCCAAGCAACATTCTGTCAAAATCTTCAGGAATAATAGTTCTCGATGACTGTTCCAACCTTGAGTTGTTTTCAATGAGTATCACCTCAAAGGATGTTGTGTTACATGGTTGTTCCCGCAGTAGATCAATAGAAAGTCTCTTCAGAAACTCTTTGCCAGGGGATATGATTCGGTGTACAATGGGAAGAAGAGGAGGGTCCTTATTTGAGAGGTTTTCTGACACTTTTGACCCCATTGGGGATGCTGCTCCTAATCTAGGTGATGAACCAAAGAATAATATACACTTGCTAAACTTGAAAGTGTTAAGAGAAGGATCACCTTCGTCGTTATTTCCAAGTCTCTCGGAGCTTTGTTGGTTAGATCTCTCATACTGTGAATCCCTCACATCCCTTCCAATTAACCTTTTTAAGCTGAAATGGCTACGAAAACTATATCTTTGTGGCTGCTCACATCTCGAGAAGCTCCCTGAGATAGAAGAGGATACGGAAAATTTAATGGTGCTTATCTTAGACGGATCAGGAATACAAGAATTACCTTCAAGCTTGCAAAATTTGGTAGCTCTTGAGGAGTTGAGCTTGCATGGTTGCAGAAGCCTTGTGTTCATTCCATCTTCAATTGGATGTCTCAGCAAACTCCGCATGCTTGATCTTACCTACTGTGAGTCCCTTGAATCTCTTCCTAGCAGCATTTTCAACCTGAAGTTGACAAAGCTTGATTTGCATGGTTGCTCAATGCTGAAGACATTATCAGAGATCATGGAACCTGCAGAATCTTTTGCTCAACTTAACTTAGCAAAAACAGCAATTAAAGAAATACCTTCATCCTTGACCTATTTGGTTGGTCTTCAAAACTTGCAGCTCAACTTGTGCAAAGATCTTGAGTTTCTTCCAAACAGCATTGGTAATCTAAACCTTCTCTCCAAGCTTGATTTTTCAAGCTGTGAGAAACTATCAGAACTCCCTAGTGACATTGGAAACCTATCATCGCTAAAGGAATTGTACCTGCATGAAAGCAGCATTGTGGAGCTTCCCGAGAGTATTGCTCATCTTTCAAGCTTGAAATCACTGGATTTAAGTGATTGCAAGAGGCTTGAATATATCCCAGGCCTTCCACCATGTTTAGAACACTTTGTGGCGTTTGATTGCCCAGCTGTTAGGAGAGTCTCAAGTTCAGGATTTGACACTAAAGTTCCATCAGATTACAAAGAAGGTATTTTCAAGTTTCACCTTACCAATAGCCAAGAACTGAATCAAAGTTCTGAGAGTAATATTGCTGGTGATGCATGGCAAAGAATGCTAGATACTGCATATAGGTCTGTGTTGTATTGCTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTAATCGTTGCAAGGGACATTCAGTAACATTGAAGCAGAGTTCTCTGAATTGGTGCAGTGATAGTAAGTTCACTGGTTTTGCTTTATGTGTGGTCTTTGGACTTGAAGGTATGCATGATGAAGAATGTAAATACAGTGTTTTTAGTTACAGATTCACATATGAATGTGATGATGGCATTCCCGTTGTTCCTAGCAATGATCAGCTAAGATACTATTTCAATTGGAGGGGCAGACACAGATTTATTGTGCATGATCACACATTCATATGGAAATCTTACTTGGACTCTCACACCATTAGCCACATGCTATCTCATAATGCACACAGCTTCAGTTTCCAGATATGCAATTACGATGTTGGTCGGTCTTGGCAAAATTATAGGCCAAGGTTCAATATAAAGGAGTGTGGAATATCACCCCTTTACAGCAACTAA 3534 0.4052 MLWNRKHDVFLSFRGEDTSNGFTTHLYSALCAKGIKTYMHGMLAAADDGVVQEKHAIQESNIYVIIFSQHYAYSARCLDQLTHILDCKHRYGRDVIPVFYNMDPSIVRNQTGTYADAFVMHQQPFGDQVQTWKLALTQLAESSPTHSNINSARPDYILVEEIVQHIWRRLKRNYSTDYQGLVGIQDHVAQIQSLLHLELETVRIIGICGIGGIGKTTIAGALYHELSSQFSFSTFALSVQQQIESHGMQHTQSKYIAELLEEKMAADNLGLSVLTEKLKVAKVLLILDDMNNSAQIRDLIGGHGSFGPGSRIIVTSRDLQTLKNAGVDEIYETKEMSFQDSLQLFSLNAFKQKNPIENYVSLSSKVLNYANGIPLALKVLGSMLHGSTEGEWECLLQKLEKIPNPEMYNLLKLSYDGLNEEQKDMFLDIACFYKGGHDVNTVKQAFDSCGFNAATGLRVLSDRGLISVLRGELMMHDLIQEMGQEIVRNQYAGEPGKHSRLWKHDDIYHVLRENKKLPNLKRLDLSGSKNLVQVPDLCHCPNIEEIILSHCKSLVRVYSSGFLNKLNCVWLNGCTELRNLNLPSNILSKSSGIIVLDDCSNLELFSMSITSKDVVLHGCSRSRSIESLFRNSLPGDMIRCTMGRRGGSLFERFSDTFDPIGDAAPNLGDEPKNNIHLLNLKVLREGSPSSLFPSLSELCWLDLSYCESLTSLPINLFKLKWLRKLYLCGCSHLEKLPEIEEDTENLMVLILDGSGIQELPSSLQNLVALEELSLHGCRSLVFIPSSIGCLSKLRMLDLTYCESLESLPSSIFNLKLTKLDLHGCSMLKTLSEIMEPAESFAQLNLAKTAIKEIPSSLTYLVGLQNLQLNLCKDLEFLPNSIGNLNLLSKLDFSSCEKLSELPSDIGNLSSLKELYLHESSIVELPESIAHLSSLKSLDLSDCKRLEYIPGLPPCLEHFVAFDCPAVRRVSSSGFDTKVPSDYKEGIFKFHLTNSQELNQSSESNIAGDAWQRMLDTAYRSVLYCFPGSAVPHWFPNRCKGHSVTLKQSSLNWCSDSKFTGFALCVVFGLEGMHDEECKYSVFSYRFTYECDDGIPVVPSNDQLRYYFNWRGRHRFIVHDHTFIWKSYLDSHTISHMLSHNAHSFSFQICNYDVGRSWQNYRPRFNIKECGISPLYSN 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00039 1177 ProSiteProfiles TIR domain profile. 5 170 IPR000157 GO:0007165
Stsc241677g00039 1177 Pfam NB-ARC domain 185 401 IPR002182 GO:0043531
Stsc241677g00039 1177 Gene3D Ribonuclease Inhibitor 502 634 IPR032675 -
Stsc241677g00039 1177 PRINTS Disease resistance protein signature 204 219 - -
Stsc241677g00039 1177 PRINTS Disease resistance protein signature 929 945 - -
Stsc241677g00039 1177 PRINTS Disease resistance protein signature 370 384 - -
Stsc241677g00039 1177 PRINTS Disease resistance protein signature 277 291 - -
Stsc241677g00039 1177 SMART till_3 6 142 IPR000157 GO:0007165
Stsc241677g00039 1177 Gene3D - 335 419 IPR042197 -
Stsc241677g00039 1177 SUPERFAMILY "Winged helix" DNA-binding domain 406 511 IPR036390 -
Stsc241677g00039 1177 Pfam TIR domain 6 184 IPR000157 GO:0007165
Stsc241677g00039 1177 Gene3D Ribonuclease Inhibitor 838 948 IPR032675 -
Stsc241677g00039 1177 Gene3D - 172 330 IPR027417 -
Stsc241677g00039 1177 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 791 963 IPR044974 GO:0006952
Stsc241677g00039 1177 Gene3D Ribonuclease Inhibitor 666 837 IPR032675 -
Stsc241677g00039 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 429 IPR027417 -
Stsc241677g00039 1177 SUPERFAMILY L domain-like 685 957 - -
Stsc241677g00039 1177 SUPERFAMILY L domain-like 515 738 - -
Stsc241677g00039 1177 SMART LRR_typ_2 517 540 IPR003591 -
Stsc241677g00039 1177 SMART LRR_typ_2 790 814 IPR003591 -
Stsc241677g00039 1177 SMART LRR_typ_2 695 719 IPR003591 -
Stsc241677g00039 1177 SMART LRR_typ_2 908 931 IPR003591 -
Stsc241677g00039 1177 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 140 IPR035897 -
Stsc241677g00039 1177 Pfam C-JID domain 1025 1176 IPR045344 -
Stsc241677g00039 1177 Gene3D - 3 171 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00039 Stsc-Chr241677 146616 151165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00039 790 949 WRKY Transcription Factor Family AT4G12020 30.000 1.53e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00039 - - aip:107633930 1179.08