Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00037 ATGGTGGCGAAATCAGGGGAGAATGGTTGTGTGGCTCCGTTCCTTGACAAGTGCTATGATATGGTCTCCGACCCATCCACTGACTCCGTCATCTGTTGGAGCCAAGACGGGCACACCTTCCTCATCTCCGATATCACCCAATTCTCCCTCTCTCTTCTCCCCGCTTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAACATCTATGGATTCAGGAAAATCGATACGGATCGCTGGGAATTCGCCAATGATAACTTTGTAAAGGGTCAAACCCATTTGCTGAAGAATATTCGTAGAAGGAAACACCCACACAATAATGGGGATCACCAAAACCCCAATTCCGATGACGGGCTTTGGAAGGAAGTAGAGAATCTAAAATCCGACAAAAATTCGCTCATGCAGGAATTGGTTAAACTGAGGCAGCACCAGGAATCTTCTGAGAATAAGTTGGTGCTACTCACCGATCGGATTCAAGGAATGGAGACTCATCAGCAGCAGATGTTATCATTCTTGGTCATGGTTGTCCAAAACCCTGCCTTCATGCTTCAACTCCTTCAACCACCTTCCTCAGACTCAGAAGGGATCATAATCAAGTATAAACCTCCTCCGCTAACCGAAAATCTGAAACCTGCACTTCCCCCATCTCCTACTTTTAAGAAGCAAGCAGAGCCTGACCTTTCTTCTTTCGAAGGGCTAAAAGACTTGCGCATCAGTTCTGAATTCTTGAAAGTTCTTATGGATGAGAAATTGTCTCCTTTGGAAAATCATTCTCCATTTCTTCTTCCAGATTTACCTGATGATGATGCTTCATGGGAACAGCTTTTTCTCGCTACTCCTTTCTTGGAAAACACTGATGATCATAGTAAGGAAACTGAGAAGCCGACCACACCCCAAGATCAAACTCAATCTTTTGAATCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTAAGAGCTGATGGAGTTCATTTGGAGGGGTCTGATAAACTGAAATCTCTAACTCAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGAGGAGGAAGGAACCAAGTAA 1083 0.4423 MVAKSGENGCVAPFLDKCYDMVSDPSTDSVICWSQDGHTFLISDITQFSLSLLPAYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANDNFVKGQTHLLKNIRRRKHPHNNGDHQNPNSDDGLWKEVENLKSDKNSLMQELVKLRQHQESSENKLVLLTDRIQGMETHQQQMLSFLVMVVQNPAFMLQLLQPPSSDSEGIIIKYKPPPLTENLKPALPPSPTFKKQAEPDLSSFEGLKDLRISSEFLKVLMDEKLSPLENHSPFLLPDLPDDDASWEQLFLATPFLENTDDHSKETEKPTTPQDQTQSFESLILEMEKTEETDALELRADGVHLEGSDKLKSLTQQMELLASETDNEEEGTK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00037 360 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241677g00037 360 MobiDBLite consensus disorder prediction 101 121 - -
Stsc241677g00037 360 MobiDBLite consensus disorder prediction 312 335 - -
Stsc241677g00037 360 FunFam Heat stress transcription factor B-4 6 104 - -
Stsc241677g00037 360 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
Stsc241677g00037 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 265 IPR027725 -
Stsc241677g00037 360 Gene3D - 7 104 IPR036388 -
Stsc241677g00037 360 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241677g00037 360 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241677g00037 360 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241677g00037 360 MobiDBLite consensus disorder prediction 284 360 - -
Stsc241677g00037 360 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241677g00037 360 Coils Coil 125 152 - -
Stsc241677g00037 360 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00037 Stsc-Chr241677 139153 141097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00037 11 350 HSF AT1G67970 43.360 8.18e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc241677g00037 HSF_DNA-bind 3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00037 K09419 - gmx:100813694 415.231