Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00034 ATGTTGGGCACTTCTTCTTCTTCTTCTTCTGCAACGAAGCATGATGTGTTTATCAGCTTCAGAGGGGAGGATACCCGTGACGGCTTCACCAGCCATCTCTGCACAGCACTGCGCAAGAGAAACATCCACACTTACATGGATGACAAGCTTGTGAGAGGGGAACAAATTTCGTCCGCACTGGAGATAGCAATTCAAGAATCCACCATTTATGTCATTGTTTTATCCCAAGGCTATGCTTCTTCCCGGTGGTGTTTAGATGAACTCACCAGCATCATGGATTGCAAGCACAAGTTTGGGAGAGAGGTGATTCCAGTGTTCTTTAAGGTGGATCCCTCACACGTTAGGCATCAGATAGAAAGTTATGGACAAGCATTTCAGAAGCACCAACACCGATACAAAGACAAAGTGCAGCCATGGAAATCTGCTCTAACCCAAGCAGCTAATCTCTCCGGCTGGGATTCACGAGTATTCAGACCTGAATCCGTACTTGTTGAAGAGATTGTGGAAGATATTTCGAGAAAATTGGATAGTCAACCCATTAATGATTACGAAGGACTTGTTGGAATTGACAAGCATGTTGAACAAATTGAGTCCATCTTGCACCTTGATTCAGCAGATGTTCGGATCATAGGGATTTGGGGCATGAGAGGAATAGGTAAAACCACAATTGCCCTTGCATTATATCGTAAGCTGGCAACCCAATTCAGTAACAGAAGCTTTTTTGAGGATGTCTCGGAAAAAACTGAAGAGTACAAAGGAGGAAAAAGGGACAGGAGTCGCAGGTTTCAAGGAATGAAGGTTCTTCTCATTGTTGATAATTTGAACAGCGCAGATCAACTTAAAGATTTGATTGGGAGGCATCGTAGCTTTGGGCAGGGAAGTAGAATTATCATTACTAGTAGTGACAAACAAGTGCTCAACAATGTAACTGACGAAATTTATGAGGTTAAGAAGATGGATTTTCAGGATTCTCTGCAACTCTTCAGCTTGCATGCCTTTAAACAAAACTACCCAATAGAATCCTACATGGAAGTATCAGTAAAGGTACTAAAGTATGCTGAAGGGATTCCATTAGCTCTCAAAGTTTTGGGCTATTTTCTTTGTGGTAGAACAAGGGAAGCATGGGAAAGTGAGTTACAAAAGCTGGAAAAGATTCCCAATCCTGAAATCTTCAATGTGTTGAAATTAAGTTTTGATGCGCTAGATGAGGAGCAACAAGATATATTTCTTGACATAGTCAGCTTTTATAGAGGACATGATGAGCATTTTGTAAAACAAACACTCAATGAGTGTGGTTTCTCGGCTACCATTGGAATAGAAGTTCTCAAGGAGAGGTGCCTTATATCTATTTTGAATCGAAAGATTGTGATGCATGACCTAATACAAGATATGGGACAAGAAATCATCCGTCTTCAAGGTGTCAATAATCCTGGAAAACGCAGTCGATTGCTGAAGCATCAAGACATTTATCAAGTTTTAAAAAATAACAAGGGGACAGATGCAATCCAGTGTATCATGCTTGACATGTGTAAAATCAGAAATGTAAGTCTACATGCTGAAACTTTCAAGATGATGCATCAACTTAGAATGCTCCAATTCTTCACGTCAAAGTCAGCGAGATACTCAAATGTGGACATTCCTGAACCTCTCATAAGTCTTCCGGATGAGCTAAGATTTCTTCGTTGGGATGGTTTCCCTCAAATATCTTTACCACAGGACTTTTGTCCAGAAAATCTTGTTGAACTCAGTATGCGTGATAGCCATCTTGAACGACTTTGGGACGGACAGCAGGATTTACCGAATTTGAAAAGACTTGACCTGAGTGGTTCTCGGAGGCTGATTGAAATACCAGACCTCTCGCAATCTCCAAATATTGAAGAGATAATTCTTAGTCGTTGTGTAAAGCTGGGTGTTGTTTACTCCTCTAGTTTCCTCGCCAAGCTCAGCTGCTTATGGTTGAATGGTTGTGATGAGCTTAGGACTTTAAATCTTCCGAGCAGTATCCTATTGAAATCTCTTGGTGTGATAGTTCTTTACAACTGTCATAGCCTTGAGAACTTTTCAGTCAGTAAAGCAAGTGAGAGAGTTCTATCATTTGGCTGTTCACGTCATGGACGACTCAGACGCAAGAAGGAGGACATGAAGAAGGAGGAGGACATGAAGAAGAAGGAGGGTGAATCCGGTAAGAGACTAGGGGATTATTATTATTGTTTAGGACATTCGTTCCCGCACGCCGGCGGTGAAACTTTTCATCCCATTGTTAGTGCTGAAGAATACGAAGAGCCCGGGGATAATATACACTCACTGAGGTTTGAAGTGTTGAGAGGAGGCTCTCCCTCATCCTTTCCAAGTCTTAAAGAGCTTTGTTGGTTAGATCTCTCTAATTGTGAATTCCTCACAATCCTTCCAGTTGATCTTTTCCAGATGAAATTTCTAAAAAGAATTGATCTCCATGGCTGCTCAAGTTTGGAAAGTTTACCTGAAATAAACCAGACTATGGAAAATTTAACTGTTCTCATCTTAGACAAAACTGCAATACAAGAACTACCTTCATCTTTGCAGCATTTCGTAGGGCTCGAAGAATTGAGCTTGCATGGGTGCCAAAGGCTTGAGTTTATTCCATCTTCCATTGGAAGTCTAAGTAGACTCCGCAAGCTTGACGTTACCTACTGTGAATCGCTTGAAACCATTCCAAGCAGCATTTTTAAGTTGAAGTTGTCAAAACTTGATTTACATGGTTGCTCAAAGCTGACGGGTTTGCCAGAGATCCTTGAAGCTGCAAAAAGTATTGCACTACTTCGGTTAACAAAAGCTGCAGTACAAGAATTGCCTTCGTCATTGGACAATTTGGTAGGCCTTACAACATTGTGCCTATCATTGTGCAGTGATCTAGAGTTGCTTCCAGACACCATTGTTAATCTAAACCTTCTCTCTGATCTCGATTGTTCTGGTTGTGCCAGATTAACAAAAGTCCCATATAACATTGGTCGTTTGTCATCACTAAGAGAACTGTCATTGCAGGGAAGTGGTATTGTGAGCATTCCTGAGAGTATTGCTCATCTTTCAAGCTTGAAATCATTGGATTTAAGTGATTGCCAAATGCTTGAATGCATTCCTGTGCTTCCACCGTTTCTAAAACAGTTATTGGCATTTGATTGCCCATCTATTAGGAGAGTGTCAAGTTGGAGGCCTAAACTCCCACCAGATTCCAAGGAGGGTGTCTTCAAATTTCATTTCACCAACAGCCAAGAATTGGATCCAAGTGGACATAGTAATATTGCTGATGATGCATGGCATACGATTATCCAGGATGCATATAGGTGTGTGCTCTTCTGCTTTCCAGGGAATGGAGTTCCTCATTGGTTCCCTTATAGATCCAGGGGAAATTCAGTTACTATGGATCCAACTTGTCTGAAACCGATCAACGGTGATAGGCTCATTGGTTTCGCTCTTTGTGTAGTTTTTTTACCAAGTTCTCAAGTTCAAATAGCCCAACAGATGCATTTTCCCTATAGACTCAAATTTGAATATGATGATGGCTTGCATGTTCTTGGCAACGATGATGATTTAAGAAACTATTTCTACTGGAATGGTACTCGTCGTATATTGGAGGTCCAAGATCATACGCTCGTGTGGAAATATACTTTGGAATCTTCAGCCATTACCTACATGCTCTCTCATGCTCGAAACTTCAATTTCGAGATCTGCGATGGATCACATTCCAATGTAGCAGAGTGCGGAATATGTCCTCTTTATAGCAAAGAGACACAAAATAATTTTCCTGATGGAGATTATTGGGTTCACTACAAGCACAAGGGTCGCGCAGCAAACCACGACTCATGGTGA 3846 0.4129 MLGTSSSSSSATKHDVFISFRGEDTRDGFTSHLCTALRKRNIHTYMDDKLVRGEQISSALEIAIQESTIYVIVLSQGYASSRWCLDELTSIMDCKHKFGREVIPVFFKVDPSHVRHQIESYGQAFQKHQHRYKDKVQPWKSALTQAANLSGWDSRVFRPESVLVEEIVEDISRKLDSQPINDYEGLVGIDKHVEQIESILHLDSADVRIIGIWGMRGIGKTTIALALYRKLATQFSNRSFFEDVSEKTEEYKGGKRDRSRRFQGMKVLLIVDNLNSADQLKDLIGRHRSFGQGSRIIITSSDKQVLNNVTDEIYEVKKMDFQDSLQLFSLHAFKQNYPIESYMEVSVKVLKYAEGIPLALKVLGYFLCGRTREAWESELQKLEKIPNPEIFNVLKLSFDALDEEQQDIFLDIVSFYRGHDEHFVKQTLNECGFSATIGIEVLKERCLISILNRKIVMHDLIQDMGQEIIRLQGVNNPGKRSRLLKHQDIYQVLKNNKGTDAIQCIMLDMCKIRNVSLHAETFKMMHQLRMLQFFTSKSARYSNVDIPEPLISLPDELRFLRWDGFPQISLPQDFCPENLVELSMRDSHLERLWDGQQDLPNLKRLDLSGSRRLIEIPDLSQSPNIEEIILSRCVKLGVVYSSSFLAKLSCLWLNGCDELRTLNLPSSILLKSLGVIVLYNCHSLENFSVSKASERVLSFGCSRHGRLRRKKEDMKKEEDMKKKEGESGKRLGDYYYCLGHSFPHAGGETFHPIVSAEEYEEPGDNIHSLRFEVLRGGSPSSFPSLKELCWLDLSNCEFLTILPVDLFQMKFLKRIDLHGCSSLESLPEINQTMENLTVLILDKTAIQELPSSLQHFVGLEELSLHGCQRLEFIPSSIGSLSRLRKLDVTYCESLETIPSSIFKLKLSKLDLHGCSKLTGLPEILEAAKSIALLRLTKAAVQELPSSLDNLVGLTTLCLSLCSDLELLPDTIVNLNLLSDLDCSGCARLTKVPYNIGRLSSLRELSLQGSGIVSIPESIAHLSSLKSLDLSDCQMLECIPVLPPFLKQLLAFDCPSIRRVSSWRPKLPPDSKEGVFKFHFTNSQELDPSGHSNIADDAWHTIIQDAYRCVLFCFPGNGVPHWFPYRSRGNSVTMDPTCLKPINGDRLIGFALCVVFLPSSQVQIAQQMHFPYRLKFEYDDGLHVLGNDDDLRNYFYWNGTRRILEVQDHTLVWKYTLESSAITYMLSHARNFNFEICDGSHSNVAECGICPLYSKETQNNFPDGDYWVHYKHKGRAANHDSW 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00034 1281 Gene3D - 320 402 IPR042197 -
Stsc241677g00034 1281 Pfam NB-ARC domain 245 384 IPR002182 GO:0043531
Stsc241677g00034 1281 Gene3D Ribonuclease Inhibitor 757 931 IPR032675 -
Stsc241677g00034 1281 SUPERFAMILY "Winged helix" DNA-binding domain 389 494 IPR036390 -
Stsc241677g00034 1281 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 803 IPR044974 GO:0006952
Stsc241677g00034 1281 Pfam TIR domain 13 188 IPR000157 GO:0007165
Stsc241677g00034 1281 SMART till_3 13 149 IPR000157 GO:0007165
Stsc241677g00034 1281 ProSiteProfiles TIR domain profile. 12 175 IPR000157 GO:0007165
Stsc241677g00034 1281 SUPERFAMILY L domain-like 776 1063 - -
Stsc241677g00034 1281 Gene3D - 179 253 IPR027417 -
Stsc241677g00034 1281 Gene3D - 254 319 IPR027417 -
Stsc241677g00034 1281 Pfam C-JID domain 1113 1256 IPR045344 -
Stsc241677g00034 1281 Gene3D - 7 178 IPR035897 -
Stsc241677g00034 1281 Gene3D Ribonuclease Inhibitor 932 1094 IPR032675 -
Stsc241677g00034 1281 Gene3D Ribonuclease Inhibitor 466 698 IPR032675 -
Stsc241677g00034 1281 PRINTS Disease resistance protein signature 353 367 - -
Stsc241677g00034 1281 PRINTS Disease resistance protein signature 597 613 - -
Stsc241677g00034 1281 PRINTS Disease resistance protein signature 209 224 - -
Stsc241677g00034 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 412 IPR027417 -
Stsc241677g00034 1281 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 177 - -
Stsc241677g00034 1281 Pfam Leucine Rich Repeat 578 597 IPR011713 -
Stsc241677g00034 1281 SMART LRR_typ_2 880 904 IPR003591 -
Stsc241677g00034 1281 SMART LRR_typ_2 785 809 IPR003591 -
Stsc241677g00034 1281 SMART LRR_typ_2 998 1021 IPR003591 -
Stsc241677g00034 1281 SMART LRR_typ_2 833 855 IPR003591 -
Stsc241677g00034 1281 SUPERFAMILY L domain-like 555 852 - -
Stsc241677g00034 1281 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00034 Stsc-Chr241677 124847 129552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00034 786 956 WRKY Transcription Factor Family AT4G12020 31.579 1.93e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00034 - - aip:107633930 1310.05