Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00029 ATGGCTGCCAACAGCAATCCGAATTCTCTGATTCATGAGAACGCAAATATCACGTCTCCTCCTCTTCTTGATCATCAACAGTCCACTACTGCTCTTAGGCTTCTCATCGTTGATCATGATCCTGCAAACTTAAAACTTATTCAAGATTTGGCTTTTCAATGCAACTATATAGTGACCACATGCTACGAGGGTTCTCAGGCTTTGAATCTTCTGCGGGAGAAAAGAGAGTGCTTCGATGTGGTGCTATGTGATTTTCATATGCCAGGGATTATAGATGACACTCACTTATTTGAACATCTTCTCCAAGAATTCAATATTCCTGTTGTGGTGATGTGTTCAATGGATGATGCGTCATCATCAAGTGCAGTGATGGAGAGCATGATGAAGAAAGAAAAAGGGGCTTGTTATAATTTAGTGAAACCTATTAGAGAGGAAGATTTGAGCAATATATGGCAGAATGTGATGATGGAGAAAACCCTAACCCGGAAAGAAGATTATTGTGATGATGATGGAAGCGAAGGAACAGTGAATAAAAAGAAGAGGAGGAGCGTATCAATAGAAGAAAGAGATGATAATCATGATCATGTGCAGCAGCCCAACACTCCCAATAAGAAGCCACGTTTTGTTTGGACAAACGAAAGGCATCGGATGTTCGTAGATGCTGTACTCCAACTAGGGATTGACAAAGCTGTGCCAAAGAAAATAATGGAATTGATGGATATGCCTCAATTGACAAGAGAAAATGTTGCCAGCCATCTCCAGAAATTCAGGATTCACATGAGGAAGAAAAGTGAAGAGTCACAGCAAATTATTAGAGAAGCTAATAATAATACATCATCGTCATTGAAGACCACTAATCACAATAATGCTCAAATTACACAAACACTCCCTCTTGCTCGTCCTTATTATTCTGATCTCGCTGCAGCTGCTAACGTTGCTGATTATCCTTTTTATCAGCCTCAACCCGCCATTCCTGATGCTACTTTCGAATTCCCTAATAATAATAATCCATTATTTGGTGGTGTCATGAACAACAATGGCATTATTGGTAGACTTGATCATCAGAGTAATAATAATCATGGTCGTTCCATTATTATGCTGAACCTGTTGCAGCCGCAGCAGTCGTCACTGATGATGCAAAATAATTATCCTCATTCATCATCAAACTTGTTTCAACAGTCTGATTATTATCCGATGCCTACTCCTCCTCCTCATCAAACATGTGATGATGAAGCTCCTTTTCAAGTTGGAATGAGTTGTGGGAGGTCTCCTCTCTTTGATTATTCATCAACACCCCTTCTTCATCATCAAATGAACAATTCATTATTAGGACAAGACAGCGGCAGCATTGCTCAGTTTCATGGTGGCTATACTACTGCTCCAGCCTCAGCATCACCATCGTCCCTTTCTCCTGCAGGATTTTTCTCATCAACAACTCATCACCACAACCAGCAGCAGCTACCTAACTACCCAACAAGTTTGGCAATTGCAGCAGCAGGAGCTCTTTCATATCTCTCAAATTCTTCTGCTGCCACACAAGTTCCCACTGCTCTATATGGCTCTTCTTCATCATTATTTGATGATTATCAATTAGGACAAGCTTTATTTCAAGGATAA 1617 0.4038 MAANSNPNSLIHENANITSPPLLDHQQSTTALRLLIVDHDPANLKLIQDLAFQCNYIVTTCYEGSQALNLLREKRECFDVVLCDFHMPGIIDDTHLFEHLLQEFNIPVVVMCSMDDASSSSAVMESMMKKEKGACYNLVKPIREEDLSNIWQNVMMEKTLTRKEDYCDDDGSEGTVNKKKRRSVSIEERDDNHDHVQQPNTPNKKPRFVWTNERHRMFVDAVLQLGIDKAVPKKIMELMDMPQLTRENVASHLQKFRIHMRKKSEESQQIIREANNNTSSSLKTTNHNNAQITQTLPLARPYYSDLAAAANVADYPFYQPQPAIPDATFEFPNNNNPLFGGVMNNNGIIGRLDHQSNNNHGRSIIMLNLLQPQQSSLMMQNNYPHSSSNLFQQSDYYPMPTPPPHQTCDDEAPFQVGMSCGRSPLFDYSSTPLLHHQMNNSLLGQDSGSIAQFHGGYTTAPASASPSSLSPAGFFSSTTHHHNQQQLPNYPTSLAIAAAGALSYLSNSSAATQVPTALYGSSSSLFDDYQLGQALFQG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00029 538 MobiDBLite consensus disorder prediction 166 207 - -
Stsc241677g00029 538 SMART REC_2 32 151 IPR001789 GO:0000160
Stsc241677g00029 538 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Stsc241677g00029 538 ProSiteProfiles Response regulatory domain profile. 33 155 IPR001789 GO:0000160
Stsc241677g00029 538 FunFam Two-component response regulator 201 264 - -
Stsc241677g00029 538 Gene3D - 31 173 - -
Stsc241677g00029 538 Pfam Response regulator receiver domain 35 149 IPR001789 GO:0000160
Stsc241677g00029 538 MobiDBLite consensus disorder prediction 166 200 - -
Stsc241677g00029 538 Gene3D - 201 263 - -
Stsc241677g00029 538 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 259 IPR006447 GO:0003677
Stsc241677g00029 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 319 IPR045279 GO:0009736
Stsc241677g00029 538 SUPERFAMILY CheY-like 32 160 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00029 Stsc-Chr241677 101114 103094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00029 27 275 Response Regulator Gene Family AT2G25180 37.548 1.95e-44 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc241677g00029 Response_reg 3.1e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00029 - K14491 adu:107481405 456.062