Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00027 ATGGCGATGGCGAAAGAGAAAGAGGAGGATGAAGAGCACAACCACAACGGTGGCAAGAGGCTCAAATGCATGAGGAACCAAGGAAAAGAGGATGATGCGGTTATTGCAACTCCAGAAGACGAGACTGAGCTTCCTTTGAAGCCAGGGATCTTCTTCTACCCACCAACACCAACCTCCTTTGTTGTTTGTGATGCTCTTGAACCTGATTTCCCCATCATCTATGTCAACAAGGTCTTTGAAATCTTCACCGGCTATCGTGCTGACGAGGCTCTCGGTCGAAATTGTCGGTTCTTGCAGTTCAGAGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGCCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCCGAAAGGATGGCACCCCTTTGGTGAATAGACTAAGACTTGCACCGATTCATGATGATGATGGAACTGTGACACACGTAATAGGCATCCAACTATTTTCTGAAGCAAATATTGATCTGAACCGTGTCTCATACCCAGTTTTCAAGAAGACTTGCAATCAAGATTTCGATAAGACCGGTAAATTTCCCCCTAAGAGTGGACAACCATTGTACAGTCAGCATNNNNNNNNNNCTGATGAAGTCCTGGCTCACAACATTTTGTCGCGTTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGATCCGCCAACTGACAAAGAATGAACACGTCAGGAAGATGGTCTGTCAAAATGTATGGGGCAAAGAAGTCACGGGTACCTTGGAATTAATGACCAAGAAGTTAGGATGGGGTCGTCTAACACGGGAACTTACTACTCTTGAGGCCGTTTGTTGGAGAAAACTAACAGTTGGAGGTGCAGTGGAACCTTCCCGCTGCAATTTCAGCGCTTGCGCTGCAGGGAATCGTCTTGTTTTGTTTGGAGGTGAAGGAGTAGACATGCAACCTATGGATGACACTTTTGTTCTGAATCTTGATGCTAAAAATCCAGAATGGCGCAGGGTTAGCGTGAAATCATCCCCACCCGGGAGATGGGGCCACACACTCTCGTGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTCCTTGATTTGGACGCTCAACAGCCAACATGGAGGGAGGTCTGTGGTGGAACTCCGCCACTTCCAAGATCTTGGCACAGTTCTTGCACAATTGAAGGGTCAAAATTGGTTGTCTCTGGTGGGTGCACAGACGCCGGGGTGCTTCTTAGCGACACATATCTATTGGACCTCACAACAGGTAATCCAACCTGGAGAGAAATTCCAACATCATGGGCACCACCTCCTCGTTTGGGGCACTCACTATCAGTCTATGGGAGGACAAAAATTCTAATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGCTTAAGATCAGGTGAGGCTTACACAATTGATCTAGAAGATGAACAACCACACTGGAGACAACTGGAATACAGTGCCTTCACTGGAGTAGCAAGTCAAAGTGCTGTGGTTCCTCCCCCAAGGCTAGATCATGTTGCTGTCAGCATGCCTTGTGGAAGAATCATTGTTTTTGGAGGTTCCATTGCGGGTCTTCACTCACCGTCTCAGCTCTTTCTGTTGGATCCAGCTGAGGAGAAACCTTCATGGAGGATCCTCAATGTTCCAGGCCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACAAGGGTTTTGGTTCTTGGCGGACACACAGGAGAGGAGTGGATACTCAACGAGTTGCATGAATTATGCTTGGCAAGCCGACAGGATTCCGACCTGTGA 1872 0.4754 MAMAKEKEEDEEHNHNGGKRLKCMRNQGKEDDAVIATPEDETELPLKPGIFFYPPTPTSFVVCDALEPDFPIIYVNKVFEIFTGYRADEALGRNCRFLQFRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKKTCNQDFDKTGKFPPKSGQPLYSQHXXXXDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNVWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTGNPTWREIPTSWAPPPRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPHWRQLEYSAFTGVASQSAVVPPPRLDHVAVSMPCGRIIVFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00027 623 Pfam Kelch motif 528 575 IPR011498 GO:0005515
Stsc241677g00027 623 CDD PAS 56 166 IPR000014 -
Stsc241677g00027 623 ProSiteProfiles PAS repeat profile. 72 103 IPR000014 -
Stsc241677g00027 623 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 39 617 - -
Stsc241677g00027 623 SMART pac_2 131 172 IPR001610 -
Stsc241677g00027 623 MobiDBLite consensus disorder prediction 1 29 - -
Stsc241677g00027 623 SUPERFAMILY Galactose oxidase, central domain 291 608 IPR011043 -
Stsc241677g00027 623 FunFam Putative LOV domain-containing protein 281 486 - -
Stsc241677g00027 623 Pfam Galactose oxidase, central domain 304 354 - -
Stsc241677g00027 623 Pfam PAS domain 61 166 IPR000014 -
Stsc241677g00027 623 NCBIfam PAS domain S-box protein 71 166 IPR000014 -
Stsc241677g00027 623 FunFam Putative LOV domain-containing protein 487 619 - -
Stsc241677g00027 623 FunFam Adagio protein 1 50 178 - -
Stsc241677g00027 623 SUPERFAMILY F-box domain 218 262 IPR036047 GO:0005515
Stsc241677g00027 623 Gene3D PAS domain 55 178 - -
Stsc241677g00027 623 Pfam Galactose oxidase, central domain 369 416 - -
Stsc241677g00027 623 Pfam Galactose oxidase, central domain 418 469 - -
Stsc241677g00027 623 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 167 IPR035965 -
Stsc241677g00027 623 Gene3D - 507 622 IPR015915 GO:0005515
Stsc241677g00027 623 Gene3D - 280 506 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00027 Stsc-Chr241677 95151 98354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00027 59 180 AGC Kinase Gene Family AT5G58140 34.677 1.43e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00027 K12116 - gmx:100301889 1170.22