Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00025 ATGCTAACAAGAAGAAAAATCCTCACCTTGTTCTCAACCAAATACACTTCTCGCCAATTCAATGAAGTTTCCAAGTTATCACAAGTTCCTTCACACCCTTATCCTGAAATCCGTAAAACCCTAAACCCCTTTAGGGTTTTTCTCTTGTGCGCATGGAATTCGACCCAAGCATCGAAATTCCCCGAATACGAGATGCCATCGGTGACGTGGGGCGTGATTCAAGGTCGCAAGGAGAAGCTGGTATCGCGGGTCATCGTATTCGACTTCCTCAGGGGCTTGGGCATTGTCCCTGACGAGTTGCAGGACCTTGAGCTACCTTCGACAGTTGAAGTCATGAGGGAGCGCGTCGAGTTCCTCCAGAAACTAGGGCTAACAATTGATGACATCAATGATTACCCTTTGATGTTGGGGTGCAGTGTGAGGAAGAACATGATTCCTGTTTTGGGGTACTTGGAAAAAATTGGGATTTCAAGGTCCAAACTTGGGGGATTCATTAAGAGCTATCCGCAGGTGTTGCATGCTAGTGTGATTGTTGAGCTTGTCCCTGTTGTAAAGTTCCTTAGGGGTCTTGATGTGGAGAGGGAGGATATTGGGTATGTCTTGCAGAAGTACCCTGAACTTCTAGGGTTCAAGCTTGAGGGTACTATGAGTACATCAGTGGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCCATGGTGACTCAGTATCCTTATTTTTTGGGGATGAGAGTTGGGACTGTGATTAAACCTTTTATTGATTACTTGTTCTCTTTGGGACTGCCAAAGAAGATTTTGGCTAGGATGTTGGAGAAGAGGGCCTATTTGCTTGGATATGATCTTGAAGAGACTATCAAGCCAAATGTGGATTGTTTGATTAGCTTTGGGATTGGGAAGGAATGTTTGCCTTCTGTTATTGCACAGTATCCTCAGATTCTTGGATTGCCCCTCAAGGCAAAGTTGTCTTCGCAGCAGTACTTCTTCAGTTTGAAGCTTAAGATTGATCCTGAAGGTTTTGCGCGAGTTGTGGAGAAGATGCCGCAGGTGGTTAGCCTTCACCAAAACGTGATAATGAAGCCGGTGGAGTTCCTCCTTGGGAGGGCGATAGCGCCGCATGATGTGGCTAGCATGGTGGTCAAGTGTCCGCAGTTAGTAGCACTAAGAGTGGAGCTCATGAAGAACAGTTTTTACTTCTTCAAGAGTGAGATGGGAAGACCACTGAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTACAGTCTGGAGTCTCGGATCAAGCCAAGATACCAAAGACTAAAGAGCAAGGGGATAAGGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGTAATTATATTGAGACTGAAAGTTCAGGTCCGACATTTTTAATGGGTGGGAAATTGAACCTACCAGGGAATGCAATTCTTTCAGATGAGGAAGAGGAGAGTGATGATGAAGTACTATACAGAAGAACTGTTTCTTTATAG 1521 0.4464 MLTRRKILTLFSTKYTSRQFNEVSKLSQVPSHPYPEIRKTLNPFRVFLLCAWNSTQASKFPEYEMPSVTWGVIQGRKEKLVSRVIVFDFLRGLGIVPDELQDLELPSTVEVMRERVEFLQKLGLTIDDINDYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGGFIKSYPQVLHASVIVELVPVVKFLRGLDVEREDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTVIKPFIDYLFSLGLPKKILARMLEKRAYLLGYDLEETIKPNVDCLISFGIGKECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIAPHDVASMVVKCPQLVALRVELMKNSFYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESSGPTFLMGGKLNLPGNAILSDEEEESDDEVLYRRTVSL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00025 506 FunFam Transcription termination factor MTERF4, chloroplastic 250 464 - -
Stsc241677g00025 506 FunFam Transcription termination factor mterf4, chloroplastic 112 249 - -
Stsc241677g00025 506 Pfam mTERF 148 456 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 198 229 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 343 373 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 234 265 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 378 409 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 SMART mt_12 306 338 IPR003690 GO:0003690|GO:0006355
Stsc241677g00025 506 Gene3D Transcription termination factor 3, mitochondrial 112 253 IPR038538 -
Stsc241677g00025 506 Gene3D Transcription termination factor 3, mitochondrial 254 466 IPR038538 -
Stsc241677g00025 506 PANTHER CGI-12 PROTEIN-RELATED 147 279 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00025 Stsc-Chr241677 86687 88412 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241677g00025 mTERF 2.6e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00025 K15031 - gmx:100809590 824.313