Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00023 ATGGCTGAGCGCGGTGGCGGAGATCGTGGCGGCTTCGGGCGTGGCTTTGGAGGCCGCGGTGGTCGCGGAGACAGGGGTCGCGGTGGGCGCCGCAGGGGTGGTGGACGCCGCGAGGAAGAGGAGAAGTGGGTCCCGGTGACGAAGCTGGGTCGGCTGGTGAAAGAGGGAAAGATCAGTAGCCTGGAACAAATCTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATAGTTGACACGTTGGTTGGTCCTTCTTTGAAGGATGAAGTCATGAAGATCATGCCCGTTCAGAAACAGACACGTGCCGGTCAGAGAACCCGTTTCAAGGCCTTCGTTGTCGTCGGTGACACTAACGGCCACGTCGGACTCGGTGTTAAGTGCAGCAAGGAGGTTGCAACCGCCATTCGCGGTGCCATCATATTGGCCAAGCTTTCAGTGATTCCTGTGAGGAGAGGTTACTGGGGGAACAAGATCGGAAAGCCACACACCGTCCCTTGCAAGGTCACCGGAAAATGTGGTTCCGTCACCGTCCGTATGGTGCCTGCTCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCCAAGAAGGTCTTGCAGTTTGCAGGGATTGACGATGTATTCACTTCTTCTAGAGGATCCACCAAAACCCTTGGAAATTTCGTTAAGGCTACATTCGACTGTTTACTGAAAACTTATGGTTTCCTTACACCTGATTTCTGGAGGGAGACTCGCTTCTCTAAATCTCCATTCCAAGAATACACTGATCTACTTGCCAAGCCAACAGCCAAGGCCCTCATCTTGGAGGATGAAAGGGTTGAGGCTTAA 822 0.5377 MAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGGGRREEEEKWVPVTKLGRLVKEGKISSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFSKSPFQEYTDLLAKPTAKALILEDERVEA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00023 273 ProSitePatterns Ribosomal protein S5 signature. 102 134 IPR018192 -
Stsc241677g00023 273 Gene3D - 42 147 - -
Stsc241677g00023 273 Pfam Ribosomal protein S5, C-terminal domain 169 240 IPR005324 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00023 273 ProSiteProfiles S5 double stranded RNA-binding domain profile. 85 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc241677g00023 273 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 241 IPR020568 -
Stsc241677g00023 273 SUPERFAMILY dsRNA-binding domain-like 81 150 - -
Stsc241677g00023 273 Gene3D - 148 240 IPR014721 -
Stsc241677g00023 273 MobiDBLite consensus disorder prediction 1 41 - -
Stsc241677g00023 273 Pfam Ribosomal protein S5, N-terminal domain 85 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc241677g00023 273 NCBIfam 30S ribosomal protein S5 38 245 IPR005711 GO:0003735|GO:0006412|GO:0015935
Stsc241677g00023 273 PANTHER RIBOSOMAL S SUBUNIT 38 231 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc241677g00023 273 FunFam 40S ribosomal protein S2 148 241 - -
Stsc241677g00023 273 FunFam 40S ribosomal protein S2 42 147 - -
Stsc241677g00023 273 MobiDBLite consensus disorder prediction 20 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00023 Stsc-Chr241677 77593 78883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00023 39 272 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 86.864 1.70e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00023 K02981 - gmx:100797105 469.159