Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00015 ATGAGGTTGGGTTTGAAGCTGCTTCAAGAAAGAGCTAAAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTGCCGGAGACATACACTGTCCCTATCTTCTTTCCCGGAGAGGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTGAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTGGTCAATCTCACACCAGATAAGCATCCTTTTGGTGTCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCGTCTAGAGCATTCCGTTTATACGGTGACAAACGTCCAGATGGGATCCATGTTGATATACCAATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCACTCCAAATGCTAGAATTGTTCAGGAAAAAGACTCCAGTAACATGAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTAACTATGGCTTTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATCCAATCAAACCCATATGACTGCATTGAACTCAAATACGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCAGGAGTTTCATCACCAAATTTCTCAGCACCTGCTGCATGGCAGGCACAGATTCTTGCTCAGCTAAATCTTGCTGGAGAAGCTCCAGATCTCAAGGTGAGCATAGGTGGTGAGAGTGTGGTAGAGGGGCGTTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAATATGGAAACCGTGCAGAAGCATGAGCTCAACACACTCGAGTCTTTATCAGCTGAAGCCCCGCTGGGTGTTGCAAATGAAACAGCTGTATTGCGTACTCTTATAGCTCTGTGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAACAGGGTGCTTCAGGTTCAACGGAGTTGGCCATTCAATACAGAATCCAAAAGAAAACTGTGATTGTTGATGCCATGAGATCTCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAACGAAACAACAGTGAGTGCCGAAGGCTAA 1098 0.4399 MRLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKRALVNLTPDKHPFGVQEVDASSLGWAMSAVSSRAFRLYGDKRPDGIHVDIPMMLPLIDMCNHSFTPNARIVQEKDSSNMKMQVKVVAETAIKEDDPLLLNYGFLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSAPAAWQAQILAQLNLAGEAPDLKVSIGGESVVEGRLLAALRVLLSSNMETVQKHELNTLESLSAEAPLGVANETAVLRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKTVIVDAMRSLSRRVKLLSSNETTVSAEG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00015 365 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 359 IPR036464 -
Stsc241677g00015 365 Pfam Rubisco LSMT substrate-binding 217 339 IPR015353 -
Stsc241677g00015 365 Gene3D set domain protein methyltransferase, domain 1 1 183 - -
Stsc241677g00015 365 FunFam Histone-lysine N-methyltransferase setd3 1 182 - -
Stsc241677g00015 365 SUPERFAMILY SET domain 3 187 IPR046341 -
Stsc241677g00015 365 Gene3D - 210 359 IPR036464 -
Stsc241677g00015 365 FunFam SET domain containing protein 205 358 - -
Stsc241677g00015 365 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 329 - -
Stsc241677g00015 365 CDD SET_LSMT 1 183 - -
Stsc241677g00015 365 Pfam SET domain 20 169 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00015 Stsc-Chr241677 41931 44702 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241677g00015 Rubis-subs-bind 9.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00015 - - gmx:100778387 601.668