Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00014 ATGGCTACTTCGAAGGCGGTTATGGCTTCCTTGACGCACTTGCGTCCGCTAACATGCGCCGCCTCATCGTCCTACCCTGCGCGACTGGTTCCTCATCCACCGGACCTCATCAAATGGGTCACCAGAGAAGGCGGCTTCGTCCACCCTGCCATCAAGATAGCGGTTAACCACTCCCACGGTCTAGGTTTACTCGCCAACCAACAAATCCCCAAAGGTTCCGACCTTATCGTTCTCCCCGACCACATTCCCTTGAGGTTTAACCACCAAGACGACACCCATTCTCTGCTCCTTCAATTGGCACGCCATGTTCCAGAGGAACTGTGGGCCATGAGGTTGGGTTTGAAGCTGCTTCAAGAAAGAGCTAAAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTGCCGGAGACATACACTGTCCCTATCTTCTTTCCCGGAGAGGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTGAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTGGTCAATCTCACACCAGATAAGCATCCTTTTGGTGTCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCGTCTAGAGCATTCCGTTTATACGGTGACAAACGTCCAGATGGGATCCATGTTGATATACCAATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCACTCCAAATGCTAGAATTGTTCAGGAAAAAGACTCCAGTAACATGAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTAACTATGGCTTTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATCCAATCAAACCCATATGACTGCATTGAACTCAAATACGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCAGGAGTTTCATCACCAAATTTCTCAGCACCTGCTGCATGGCAGGCACAGATTCTTGCTCAGCTAAATCTTGCTGGAGAAGCTCCAGATCTCAAGGTGAGCATAGGTGGTGAGAGTGTGGTAGAGGGGCGTTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAATATGGAAACCGTGCAGAAGCATGAGCTCAACACACTCGAGTCTTTATCAGCTGAAGCCCCGCTGGGTGTTGCAAATGAAACAGCTGTATTGCGTACTCTTATAGCTCTGTGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAACAGGGTGCTTCAGGTTCAACGGAGTTGGCCATTCAATACAGAATCCAAAAGAAAACTGTGATTGTTGATGCCATGAGATCTCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAACGAAACAACAGTGAGTGCCGAAGGCTAA 1425 0.4667 MATSKAVMASLTHLRPLTCAASSSYPARLVPHPPDLIKWVTREGGFVHPAIKIAVNHSHGLGLLANQQIPKGSDLIVLPDHIPLRFNHQDDTHSLLLQLARHVPEELWAMRLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKRALVNLTPDKHPFGVQEVDASSLGWAMSAVSSRAFRLYGDKRPDGIHVDIPMMLPLIDMCNHSFTPNARIVQEKDSSNMKMQVKVVAETAIKEDDPLLLNYGFLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSAPAAWQAQILAQLNLAGEAPDLKVSIGGESVVEGRLLAALRVLLSSNMETVQKHELNTLESLSAEAPLGVANETAVLRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKTVIVDAMRSLSRRVKLLSSNETTVSAEG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00014 474 SUPERFAMILY SET domain 31 296 IPR046341 -
Stsc241677g00014 474 FunFam Histone-lysine N-methyltransferase setd3 3 291 - -
Stsc241677g00014 474 Pfam Rubisco LSMT substrate-binding 326 448 IPR015353 -
Stsc241677g00014 474 Gene3D set domain protein methyltransferase, domain 1 3 291 - -
Stsc241677g00014 474 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 32 438 - -
Stsc241677g00014 474 SMART set_7 49 284 IPR001214 GO:0005515
Stsc241677g00014 474 CDD SET_LSMT 50 292 - -
Stsc241677g00014 474 ProSiteProfiles SET domain profile. 49 278 IPR001214 GO:0005515
Stsc241677g00014 474 FunFam SET domain containing protein 314 467 - -
Stsc241677g00014 474 Pfam SET domain 60 278 IPR001214 GO:0005515
Stsc241677g00014 474 Gene3D - 319 468 IPR036464 -
Stsc241677g00014 474 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 468 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00014 Stsc-Chr241677 41931 44702 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241677g00014 SET 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00014 - - gmx:100778387 739.954