Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00009 ATGCAGCTTCATGAGATGAACCAGTTGACGAAGAAGAGTAATTTTTTTTTGGTAAACATATCAAGCAATAAAAAACTTGAAAACTACGGCCCAAAAGCCATGCTAGTTAGTTTAATGGGCCTGATAATTAAGGCCCAAATGTCTGCTTTACATAAAACGCTAATATTGGTAAAGGAAACTTTCACCCGCATCGTTCTCCAAAACCCTAGCGGCCGGCAATCGTCGTGGTGTTGGGGTGTTGCAATCATGGCAGATGTGGAAGATGTAGCAGCGGGATCAGGGCAGCAGCAGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGGGGTGTGGATCTCGATGCCCTCCTCGACATGTCAACCGACGACCTCGTCAAGCTCTTCATCGCACGCGCCCGAAGAAGGTTCCAGAGGGGTCTCACTAGGAAGCCCATGGCGCTTATCAAGAAGCTCAGGAAAGCGAAGAGGGAAGCTCCGGCGGGTGAGAAGCCCGAGCCAGTTCGCACACACCTTCGGAACATGATAATTGTTCCTGAGATGATTGGTAGCATCATTGGTGTTTATAATGGTAAGACGTTCAACCAGGTTGAGATTAAGCCTGAGATGATTGGGCATTACCTTGCTGAGTTCTCCATTTCTTACAAACCTGTCAAGCACGGTAGGCCTGGTATTGGTGCCACCCACTCTTCCAGGTTCATCCCTCTCAAATGA 711 0.4796 MQLHEMNQLTKKSNFFLVNISSNKKLENYGPKAMLVSLMGLIIKAQMSALHKTLILVKETFTRIVLQNPSGRQSSWCWGVAIMADVEDVAAGSGQQQPKKRTFKKFSFRGVDLDALLDMSTDDLVKLFIARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00009 236 Pfam Ribosomal protein S19 134 219 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 SUPERFAMILY Ribosomal protein S19 139 220 IPR023575 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 Gene3D 30s Ribosomal Protein S19; Chain A 93 236 IPR023575 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 PRINTS Ribosomal protein S19 family signature 169 188 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 PRINTS Ribosomal protein S19 family signature 189 201 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 PRINTS Ribosomal protein S19 family signature 201 216 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 NCBIfam 30S ribosomal protein S19 103 236 IPR005713 GO:0003735|GO:0006412|GO:0015935
Stsc241677g00009 236 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 95 236 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc241677g00009 236 FunFam 40S ribosomal protein S15 93 236 - -
Stsc241677g00009 236 ProSitePatterns Ribosomal protein S19 signature. 189 213 IPR020934 GO:0003723
Stsc241677g00009 236 Hamap 30S ribosomal protein S19 [rpsS]. 132 225 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00009 Stsc-Chr241677 34515 35644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00009 83 236 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.662 5.21e-93 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00009 K02958 - gmx:100777379 288.5