Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00003 ATGGACGACGTTAAAGACAAGATGAAAGGTTTCATGAAAAAAGTCAACACCTCTTTCACATCTTCATCCTCCGGCAAATTCAAGGGCCAAGGTCGCGTCTTGGGATCTTCTTCTTCTTCTCCCTCTCCTCCTCCTCCTTATGCAACCGCCAATTCCACTTCCACCTCTGGCCCTCGCCCCACCCCATCCCACAACCTCAATTCCAAACCCACTTCTTCAACGGTAACCAATCCCAAGCCCGAGCCCCCCAAACCCGCCGCCTCTTCCGACAGGGATCGCAAACCGGCCCCTTCTGGCTTCGACCCTTTTGATTCATTGGTCACTTCATCCAAGAGATCTCAGAATGGGTATTCCCTTAATGTGTATGAGTGCCCCGTTTGTGGGAAATCTTTTAGATCCGAAGATGAGGTTTCTGAGCATGTGGATACCTGTTTGAGTAACAACGGTGATTCAGCTGAGCGTGTTCATGTCTCTGAATTGGCAGAGAGTGGAGCTGACTCCAATGCTGATTTGGAGGTATGTGTTGGCACTTATGTCTCAGGGAAGCCTTCTGAGGGATCCATCGATATTGTTTTGAAGCTGTTGAAGAATGTTGTTAGAGAGCCTGAGAATGCCAAGTTTAGGAAGATCAGGTTGAGCAATCCTAAGATTAAGGAGGCTGTTGCCGATGTTACTGGTGGAATTGAGTTGATTACCTTTCTTGGCTTCCAACTCAGGGACGAGAATGGGGAGACTTGGGCTCTCATGGACCTTCCTTCTGAGGAGCAAATAAGATTGATCAAGAAAGCTACACTCTTGCTGGAATCACAGCTGGTGCTGCATGTATCTCCAAAGACTGAGAATTTGGCTGCACCTTCTGCTGAGAAGATAGAAGCAAAGGCTGAACCCAAGCCGGTCGACAGACAGGTGAAGGTCTTCTTTGCCGTTCCTGAAAGTGTTGCAGCAAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGTTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATCCCCAAGTCATATAAGGAAAAGCAAGCAAAGGCTGCCAAGAAGAGATACACAAAAGCTATTATTAGGGTTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAGCCAACTATGGCCCTCTATGAGTTTGTGAGCTCTGCATTGAAACAACCAGCTTTGGAGTTTGAGCTAATGCATCCCATAGTAGTCCAACGGCGAGCAATCCCTCGTTTCGGCAAAGCAGGAGAGAACAGTAAAACACTGGAGGATGAGGACTTGGTGCCTTCAGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACGGGTCTCAAAAACGAATTGCTTGAAATCAGTGAACCACTTGTAAATGCTTAA 1425 0.4618 MDDVKDKMKGFMKKVNTSFTSSSSGKFKGQGRVLGSSSSSPSPPPPYATANSTSTSGPRPTPSHNLNSKPTSSTVTNPKPEPPKPAASSDRDRKPAPSGFDPFDSLVTSSKRSQNGYSLNVYECPVCGKSFRSEDEVSEHVDTCLSNNGDSAERVHVSELAESGADSNADLEVCVGTYVSGKPSEGSIDIVLKLLKNVVREPENAKFRKIRLSNPKIKEAVADVTGGIELITFLGFQLRDENGETWALMDLPSEEQIRLIKKATLLLESQLVLHVSPKTENLAAPSAEKIEAKAEPKPVDRQVKVFFAVPESVAAKIELPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSYKEKQAKAAKKRYTKAIIRVQFPDGVVLQGVFSPWEPTMALYEFVSSALKQPALEFELMHPIVVQRRAIPRFGKAGENSKTLEDEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00003 474 MobiDBLite consensus disorder prediction 49 75 - -
Stsc241677g00003 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 152 IPR013087 -
Stsc241677g00003 474 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 473 - -
Stsc241677g00003 474 MobiDBLite consensus disorder prediction 14 38 - -
Stsc241677g00003 474 CDD PUB 180 269 - -
Stsc241677g00003 474 SUPERFAMILY PUG domain-like 184 269 IPR036339 -
Stsc241677g00003 474 Pfam PUB domain 185 260 IPR018997 -
Stsc241677g00003 474 SMART PGNneu 186 253 - -
Stsc241677g00003 474 SUPERFAMILY Ubiquitin-like 334 447 IPR029071 -
Stsc241677g00003 474 Gene3D Classic Zinc Finger 118 149 - -
Stsc241677g00003 474 Gene3D - 357 450 - -
Stsc241677g00003 474 MobiDBLite consensus disorder prediction 1 109 - -
Stsc241677g00003 474 FunFam UBX domain-containing protein 6 357 448 - -
Stsc241677g00003 474 ProSiteProfiles UBX domain profile. 363 447 IPR001012 GO:0005515
Stsc241677g00003 474 Pfam UBX domain 363 443 IPR001012 GO:0005515
Stsc241677g00003 474 Gene3D - 180 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00003 Stsc-Chr241677 10435 13212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00003 1 395 C2H2 Transcription Factor Family AT2G01650 56.618 9.16e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241677g00003 UBX 5.9e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00003 K14011 - gmx:100779271 619.002