Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241677g00002 ATGGAGAGAGATTTCATGGGTCTAAGCTCAAAGGAGCCTCAAGCTGTGGTCAAAGAGGAGATCACCGATGATGCCTCCAAAGACTCCGGCTTCAGCAAGGGCTCCACTGCTCAATGGGTTTTCTCAAGCAAAGTCTCTGCTGTTCCACACTTGATGTCTTTCAAGGTGTCTCAAGATGACAAGCCTTTTGATTCCACTCAAAACTGCCCTGCTTCTCAACTTCAGAAATCTTTCAATCACAATGGACAAGGTGGCTTTCATTTTTCCATGACCCCGTATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTTCTGGGGGGAATCCATACCTGAAGAATCACTTTGCAACTGCTGGTCAGAATATGGGCAATGCTAATGTGAAGCAGACATTACTTGGGGGAATACCCATTACACAGCCTCATTCGGTTCTTCCAACCATCGGTCCTGTTACTGGAATACCTGAATCACGCAATGTGAAAACAGCTGCACCTTCTGCACAACTTACCATCTTCTATGCTGGTACTGTCAATGTCTTCGAAGATATCTCTGCTGAAAAGGCACAAGCTATTATGTTGTTGGCTTGCAAAGAGTTGGCACAGCCCAAGGTTCAGGTACCCGGCTCAAAGTTGGGAGCTGGTGATAGTGTGCCTGTTAGTCAACCTGCAAATACACCACCATGCTCAGGTGTTCCAAGTCCTTTATCTGTCTCATCGCATACCGGTGCACATTCAGGGAGTGGCTCCACTAGTACTGATGAATTTCTGACTGCTAAATCAACTGGAATTCCCACCGCTTCTGTTAGTAAGGTGGAGCCTCCAAAGGTAGTCAGTGCAACTGCTATGTTGACTTCAGCTGTGCCACAGGCTCGAAAAGCATCGTTGGCTCGTTTTCTAGAGAAGCGCAAGGAGAGGGTGATGAATTCAGCACCATATAACCTGAACAAAAAGAGTGAGGAGTGTGCTACCAGCAATGCTTCTAATGCCCTACCAGTCAAGCAAGGATAG 1053 0.4615 MERDFMGLSSKEPQAVVKEEITDDASKDSGFSKGSTAQWVFSSKVSAVPHLMSFKVSQDDKPFDSTQNCPASQLQKSFNHNGQGGFHFSMTPYPVQHDVNSVNRPHDVKMFSVSNQAISVSGGNPYLKNHFATAGQNMGNANVKQTLLGGIPITQPHSVLPTIGPVTGIPESRNVKTAAPSAQLTIFYAGTVNVFEDISAEKAQAIMLLACKELAQPKVQVPGSKLGAGDSVPVSQPANTPPCSGVPSPLSVSSHTGAHSGSGSTSTDEFLTAKSTGIPTASVSKVEPPKVVSATAMLTSAVPQARKASLARFLEKRKERVMNSAPYNLNKKSEECATSNASNALPVKQG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241677g00002 350 ProSiteProfiles Tify domain profile. 177 212 IPR010399 -
Stsc241677g00002 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 340 IPR040390 -
Stsc241677g00002 350 SMART tify_2 177 212 IPR010399 -
Stsc241677g00002 350 Pfam Jas motif 303 327 IPR018467 -
Stsc241677g00002 350 Pfam tify domain 179 210 IPR010399 -
Stsc241677g00002 350 MobiDBLite consensus disorder prediction 233 270 - -
Stsc241677g00002 350 MobiDBLite consensus disorder prediction 226 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241677g00002 Stsc-Chr241677 4291 7092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241677g00002 39 339 Tify Gene Family AT3G17860 35.494 8.86e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc241677g00002 tify 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241677g00002 K13464 - gmx:100807043 435.261