Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241676g00028 ATGGCTCTTGAATCAGATTTAGCTACAAAAGTACTTGATGATGAGTGCCTCAACCTGCCCCAAGTTGAGATGCAAGAGGATGAAAGAGACCATTTATTCTTTAGTGAAATGGCATGGTCAAATTCTGTCAATATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCAAAAGAAATTGCGGATCAAATTGGAACCAACAACCCTGAAGCACCAACAATGTTGGATCGTGTTCTTGGGCTTCTTGCATGTCACTCGTTCCTAAGTTGTGTTGTTGAAGATCCACAAAATATTAAGTTGCATCAGAGGTTGTATAGTCTCTCACCTAGTTCCAAATATTTTGTGAATGATGATGCTGATGGTGTGTCTGTGGGACCCGTGTTTTTGCTGTCTCTGGATAAAGTCTTCTACCAAAGCTGGAGTGAATTGAAAGGAACAATTCTGGAAGGAGGGAAACCATTTAATAGGGCTCATGGCATGCAACTCTTTGATTATACAAAGATTGATGCTAGGTTTAACCAGGTTTTCAACAAAGGAATGCACAACATCTCCATTATAACAATGAAGAGGATTCTTGACATCTACCAAGGCTTTGAGCACATCAATAAACTAGTGGATGTTGGTGGTAACGATGGAACAACGATGAAATTAATCACTTCCAAACACCCTCATATTCGTGGCATCAATTTTGATTTGCCACATGTCATAGAACTAGCCCCTGCCCATCCTGGTTTAGAGCACTTTAGAGGAGATATGTTTGAGAGTGTTCCCAACGGAGATGCCATTTTCATGAAGTATATCCTTCATGATTGGGATGATGAAGATTGCTTGAAGATCTTAAAGAATTGTCACAAGGCCATTCCCAATGATGGAAAGGTGATTGTGGTGGACAACATTCTTCCTGTTGTGCCTGAGCCAACAGCTATTGCTAAGAAAGCATTTAGAATTGATCTTTCCATGTTGACTCAGACTCTAAGAGGAAAGGAACGAACCAAGCAAGAATTCATGGACTTGGCTAAAAGATCTGGATTCACTTCCATAAAATTTGCTTGTTATGTAAATAGCATATGGGTCATGGAGTTCTACAAGTAG 1131 0.4032 MALESDLATKVLDDECLNLPQVEMQEDERDHLFFSEMAWSNSVNMALKTTIELGVFDIIAKAGEGAKLSAKEIADQIGTNNPEAPTMLDRVLGLLACHSFLSCVVEDPQNIKLHQRLYSLSPSSKYFVNDDADGVSVGPVFLLSLDKVFYQSWSELKGTILEGGKPFNRAHGMQLFDYTKIDARFNQVFNKGMHNISIITMKRILDIYQGFEHINKLVDVGGNDGTTMKLITSKHPHIRGINFDLPHVIELAPAHPGLEHFRGDMFESVPNGDAIFMKYILHDWDDEDCLKILKNCHKAIPNDGKVIVVDNILPVVPEPTAIAKKAFRIDLSMLTQTLRGKERTKQEFMDLAKRSGFTSIKFACYVNSIWVMEFYK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241676g00028 376 Pfam O-methyltransferase domain 153 357 IPR001077 GO:0008171
Stsc241676g00028 376 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
Stsc241676g00028 376 FunFam Caffeic acid O-methyltransferase 129 376 - -
Stsc241676g00028 376 PANTHER O-METHYLTRANSFERASE 40 374 IPR016461 GO:0008168
Stsc241676g00028 376 FunFam Caffeic acid 3-O-methyltransferase 15 127 - -
Stsc241676g00028 376 PIRSF O-mtase 17 376 IPR016461 GO:0008168
Stsc241676g00028 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 376 IPR016461 GO:0008168
Stsc241676g00028 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 375 IPR029063 -
Stsc241676g00028 376 Gene3D Vaccinia Virus protein VP39 129 376 IPR029063 -
Stsc241676g00028 376 SUPERFAMILY "Winged helix" DNA-binding domain 26 130 IPR036390 -
Stsc241676g00028 376 Gene3D - 18 127 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241676g00028 Stsc-Chr241676 212773 220365 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241676g00028 18 376 Monolignol Biosynthesis Gene Families AT5G54160 49.587 4.21e-122 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241676g00028 K13066 - gmx:100789402 446.047