Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241676g00026 ATGTCTCTTGCATCATATATTGATGCAAAACACGAAGATGAAGAAGATAGCTTCGTGTTTGCTGAAATGGCATGGTCAAATGTGGTTCCAATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGCAAAAGAAGGTGAAGGTGCAAAGCTCTCAGCAAAAGACATTGTGGATCACATTGAAACCAACAACCCTGAAGCACCAACTATGTTGGATCGTGTTCTTAGGCTTCTCGCAAGTCACTCGTTACTGTGTTGTTCTGTTGTCGAAGATCCACAAAATGTTAACTTGCATCAGAGACTGTATAGTCTCTCACCTAGTTCCAAATATTTTGTGACCGATGCTGATGGCGTATCTTTGGGACCCTCAGTGTTGTTGTCTCTGGATAAAGTCTTCTACCAAAGCTGGTCAGTATAA 426 0.4155 MSLASYIDAKHEDEEDSFVFAEMAWSNVVPMALKTTIELGVFDIIAKEGEGAKLSAKDIVDHIETNNPEAPTMLDRVLRLLASHSLLCCSVVEDPQNVNLHQRLYSLSPSSKYFVTDADGVSLGPSVLLSLDKVFYQSWSV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241676g00026 141 Pfam Dimerisation domain 31 82 IPR012967 GO:0046983
Stsc241676g00026 141 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 141 IPR016461 GO:0008168
Stsc241676g00026 141 PANTHER O-METHYLTRANSFERASE 23 139 IPR016461 GO:0008168
Stsc241676g00026 141 SUPERFAMILY "Winged helix" DNA-binding domain 11 117 IPR036390 -
Stsc241676g00026 141 Gene3D - 27 141 IPR036388 -
Stsc241676g00026 141 FunFam Caffeic acid 3-O-methyltransferase 3 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241676g00026 Stsc-Chr241676 198063 198488 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241676g00026 13 139 Monolignol Biosynthesis Gene Families AT5G54160 41.221 1.87e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241676g00026 K13066 - aip:107606823 198.749