Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241676g00006 ATGAAGATCCTTCGGACGCTTGCCAGTTACCTGTGGATGAAAGATAATCCTGAGTTTCGGTTTCGGGTTGTTGCTGCCTTGGGTTTTCTTGTTGGGGCTAAGGTTTTGAATGTTCAAGTTCCTTTCTTATTCAAGCTGGCTGTTGATTGGTTGACAACTGCCACGGGCAATGCTGATTCTCTTGCTTCTTTTGCGGCTGCAAATCCAACTGCTGTGACTGTTTTTGCAACACCAGTGGCTGTGTTGATTGGATATGGAATTGCTCGTACCGGAGCTTCTGCATTCAATGAATTGCGGACTGCGGTGTTTTCCAAGGTAGCGCTGCGAACAATTCGTCTAGTATCTAGGAAGGTGTTCTCACATTTGCATGACCTTGACCTCCGGTATCATCTAAGCCGAGAAACTGGTGGCCTAAATAGAATAATCGATCGAGGAAGCCGTGCAATAAATTTCATACTCTCGTCTATGGTGTTCAACGTAGTCCCCACTATATTAGAGATATCTATGGTATCAGGTATATTGGCCTACAAATTTGGAGCTCCTTTTGCATGGATTACTTCCCTATCAGTTGCTGCTTATGTTGCTTTTACACTTAGTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAAGGCTGATAATGATGCTAGTACAAAAGCTATTGATTCACTTATTAATTATGAGACCGTCAAATATTTCAATAATGAAGATTATGAAACCAGTAAATATGATGAGTACCTAAAGAAGTATGAGGATGCTGCTCTGAAAACACAACGCAGTCTTGCTTTGTTAAACTTTGGTCAAAATATTATATTTAGTACAGCTCTATCAACAGCAATGGTTCTGTGTTCCCATGGGATTATGGACGGCAGGTTGACAGTTGGTGATTTGGTTATGGTCAATGGCCTTCTCTTCCAACTGTCTCTTCCACTCAACTTCTTAGGTAGTGTTTATCGTGAGACTATACAGAGTCTAGTTGACATGAAGTCCATGTTTCAGTTACTTGAGGAAACAGCAGACATTAAGGACACAGAAGATGCGAAGCCTCTGAGATTTGATGGCGGAAGAATCGAATTTGACAATGTACATTTCAGTTACCTCTCAGAAAGAAAGATACTAGATGGGATATCACTTGTTGTGCCAGCTGGTAAAAGCGTGGCAATTGTCGGAACAAGCGGAAGTGGAAAATCAACTATTCTTAGATTGATATTTAGGTTTTTTGATCCTCATACTGGAAAGATTAGGATAGACGGACAAGATATTCAGCAGGTAACCCTTGAGAGTTTGCGGAAGCTCATCGGTGTTGTTCCTCAAGACACTGTACTTTTCAATGATACAATATTTCATAACATTCACTACGGTCGGCTTTCAGCTACAGAAGAAGAGGTCTATGATGCTGCTCGGCAAGCAGCAATTCACGACACTATCATGAATTTTCCTCAGAAATATTCAACTGTTGTGGGCGAGCGAGGGCTGAAGCTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCCTTCTTAAAAGCACCTGCGATACTGTTGTGTGATGAAGCTACGAGTGCTCTCGACAGCACAACAGAAGCGGAGATTTTAAGTGCATTGAAGTCTTTATCAAATAATCGAACTTCCATATTTATTGCTCACAGGCTTACCACTGCAATGCAGTGCGACGAGATCATAGTTTTGGAAAATGGAAAGGTGATTGAACAAGGACCCCATGAAGTTCTCTTATCAAATGGAGGAAGATATGCACAGCTTTGGGGACAGCAAAATAACACAATTGATGCAATTGATACAGCCATCAAACTTGGTGCTCAATCTTAA 1836 0.4178 MKILRTLASYLWMKDNPEFRFRVVAALGFLVGAKVLNVQVPFLFKLAVDWLTTATGNADSLASFAAANPTAVTVFATPVAVLIGYGIARTGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGGLNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVAFTLSITQWRTKFRKAMNKADNDASTKAIDSLINYETVKYFNNEDYETSKYDEYLKKYEDAALKTQRSLALLNFGQNIIFSTALSTAMVLCSHGIMDGRLTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEETADIKDTEDAKPLRFDGGRIEFDNVHFSYLSERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLIFRFFDPHTGKIRIDGQDIQQVTLESLRKLIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYDAARQAAIHDTIMNFPQKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSNNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSNGGRYAQLWGQQNNTIDAIDTAIKLGAQS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241676g00006 611 CDD ABCC_ATM1_transporter 359 594 - -
Stsc241676g00006 611 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 8 590 IPR039421 -
Stsc241676g00006 611 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524|GO:0016887
Stsc241676g00006 611 Gene3D - 352 606 IPR027417 -
Stsc241676g00006 611 Gene3D ABC transporter type 1, transmembrane domain 10 349 IPR036640 GO:0005524|GO:0016020
Stsc241676g00006 611 FunFam ABC transporter B family member 25 351 605 - -
Stsc241676g00006 611 Pfam ABC transporter 375 524 IPR003439 GO:0005524
Stsc241676g00006 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 594 IPR027417 -
Stsc241676g00006 611 CDD ABC_6TM_ATM1_ABCB7 26 333 - -
Stsc241676g00006 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 593 IPR003439 GO:0005524
Stsc241676g00006 611 FunFam ATP-binding cassette sub-family B member 7 1 347 - -
Stsc241676g00006 611 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 24 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241676g00006 611 SMART AAA_5 384 570 IPR003593 GO:0016887
Stsc241676g00006 611 SUPERFAMILY ABC transporter transmembrane region 18 339 IPR036640 GO:0005524|GO:0016020
Stsc241676g00006 611 Pfam ABC transporter transmembrane region 26 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241676g00006 Stsc-Chr241676 47819 55945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241676g00006 197 595 Calmodulin-binding Proteins AT2G36910 37.073 4.10e-66 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241676g00006 K05662 - cave:132163259 1053.89