Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241675g00023 ATGAAGGTAGCTATTTGTGGAACGGTCGGTTCGGGGAAATCGAGTCTGCTGTCTGGTATTTTAGGAGAGATATACAAGCAATCTGGCATGGTGAAGATCAGTGGAAGCAAAGCTTATGTTCCACAGTCTCCATGGATACTTACAGGGAATATCAGAGACAATATCACATTTGGAAAAGAGTATGATCCTGAAAAGTATGAGAAGACTATAGAAGCTTGTGCATTGAAGAAGGACTTTGAGCTATTCTCTTGTGGTGATCTTACTGAGATTGGAGAAAGAGGGATCAACATGAGTGGTGGACAGAAGCAAAGGATTCAGATAGCGCGAGCCGTTTACCAAGATGCTCATATATATCTTCTAGATGATCCTTTTAGCGCCGTCGATGCACATACCGGAACACACCTATTTAAGGAGTGCCTTATGGGGATCCTTAAGGAGAAGACTATACTTTTTGTAACACACCAAGTTGAATTTCTTCCAGCAGCAGATCTGATCCTGGTGATGCAAAATGGCAAAATTACACAAGCTGGGAAATTTGAAGAGCTTCTACAGCAAAACATAGGATTTGAAGTCTTGGTTGGTGCTCATAGTAAAGCTCTCGAGTCGATTCTAACCGTCGAAAACTCGAGCAGAACAGCTCAAAATCCCATAGCTGAAGCAGAATCAAACTCAAATGCAAAACTCATGCACACAGAACAGCATGACACAGTTGAAGACAATAATCCACCTGCAGAGAGCAAGAAAGGAAATGAAGGAAAATTGGTGCAAGATGAAGAAAGAGAGACAGGAAGCATATCAAGAGAAGTGTACTGGTCTTATCTGACAACTGTGAAAGGAGGAGCATTGGTTCCAGTCATAATCTTAGCACAATCTTCATTCCAAGTACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAAGTAGTGATGCTAAGCCTATATTTGAGATGAACTTCATACTGCTTATTTACATGGTGCTTTCTGTGGCCGGCGCGCTATGCGTCCTGGTTCGAGCCATGTTGGTCGCATATACCGGCCTCTGGACAGCACAGACATTTTTCACAGGCATGCTGCATAGTGTGCTTAGAGCTCCAATGTCATTCTTTGATTCAACACCAGCTGGAAGAATCTTGAACAGGGTGTCTACAGATCAAAGTGTTCTAGACTTGGAGATGGCAACAAAATTAGGATGGTGTGCTTTCTCTGTGATCCAAATGCTGGGAACTATTGCAGTGATGTCTCAGGTGGCATGGCAAGTGTTTGCCATTTTCATTCCAGTAACTGCAGTTTGCATATGGTATCAAAGATATTATACACCAACAGCAAGAGAATTGGCTCGCTTAGCACAGATACAAATTGCACCGATCCTCCACCATTTCGCAGAATCTTTAGCCGGAGCAGCTTCGATTCGAGCTTTCGATCAAGAAGGCCGATTCGTAGACACAAATCTTGATCTTGTGGATGGCCATGCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACATTCTATCAAATTTTGTTTTTGCATTCTCACTTGTTATGCTTGTGACCCTCCCTGAAGGAATAATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTGAATGTGTTGCAAGCTCAAGTTATATGGAATATATGCAATGCTGAAAATAAGATGATCTCAGTTGAAAGAATTCTGCAGTACAGAAATGTAGCAAGTGAGGCGCCGCTTGTCATCGAGGACAGCAGGCCGCCAAGCAACTGGCCGGAGACCGGAACAATATGCTTCACAAATTTACAGATACGCTATGCTGAACAACTCCCATCTGTTCTTAAAAACATCACATGCACGTTCCCTGGACGGAAGAAAATCGGCGTTGTAGGGCGAACCGGAAGTGGAAAATCGACCCTTATACAGGCGATTTTTAGGATTGTTGAGCCAAGAGAAGGAAGCATTGTGATAGACAATGTAGACATATGCAAGATAGGACTTCATGACTTAAGGTCAAGGCTCAGCATCATCCCACAAGACCCTTCCATGTTTGAAGGCACTGTTAGGGGCAACTTAGACCCCCTGGAACTATACTCTGACACTCAAATCTGGGAGGCACTAGATAAATGTCAACTTGGTCAGCTAGTGAGGGAAAAGCAAGAGAAGTTGGACAGCCCAGTTGTAGAAAATGGTGAGAACTGGAGTGTAGGACAAAGGCAACTATTTTGCCTCGGAAGAGCATTGCTGAAGAGAAGTAGCATATTAGTTCTTGATGAAGCAACTGCCTCTGTGGACTCTGCAACTGATGGTGTGATACAGAAGATCATCAGTCACGAGTTTAAAGATCGAACCGTCGTCACAATTGCTCATCGGATTCACACGGTTATCGACAGTGATCTTGTTTTGGTGCTCAGCGAAGGGAGAATTGCTGAGTATGATGAGCCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTATAAACTGATAAAGGAGTATTCTAGCAGATCAAGTGGCTTCAGCAGCTTGGCTTCTCACCATGTTCAAAGCTAA 2568 0.4319 MKVAICGTVGSGKSSLLSGILGEIYKQSGMVKISGSKAYVPQSPWILTGNIRDNITFGKEYDPEKYEKTIEACALKKDFELFSCGDLTEIGERGINMSGGQKQRIQIARAVYQDAHIYLLDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGKITQAGKFEELLQQNIGFEVLVGAHSKALESILTVENSSRTAQNPIAEAESNSNAKLMHTEQHDTVEDNNPPAESKKGNEGKLVQDEERETGSISREVYWSYLTTVKGGALVPVIILAQSSFQVLQIASNYWMAWVCPTSSDAKPIFEMNFILLIYMVLSVAGALCVLVRAMLVAYTGLWTAQTFFTGMLHSVLRAPMSFFDSTPAGRILNRVSTDQSVLDLEMATKLGWCAFSVIQMLGTIAVMSQVAWQVFAIFIPVTAVCIWYQRYYTPTARELARLAQIQIAPILHHFAESLAGAASIRAFDQEGRFVDTNLDLVDGHARPWFHNVSAMEWLSFRLNILSNFVFAFSLVMLVTLPEGIINPSIAGLAVTYGINLNVLQAQVIWNICNAENKMISVERILQYRNVASEAPLVIEDSRPPSNWPETGTICFTNLQIRYAEQLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPREGSIVIDNVDICKIGLHDLRSRLSIIPQDPSMFEGTVRGNLDPLELYSDTQIWEALDKCQLGQLVREKQEKLDSPVVENGENWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQKIISHEFKDRTVVTIAHRIHTVIDSDLVLVLSEGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSSGFSSLASHHVQS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241675g00023 855 Gene3D ABC transporter type 1, transmembrane domain 245 582 IPR036640 GO:0005524|GO:0016020
Stsc241675g00023 855 SUPERFAMILY ABC transporter transmembrane region 284 582 IPR036640 GO:0005524|GO:0016020
Stsc241675g00023 855 Gene3D - 1 215 IPR027417 -
Stsc241675g00023 855 CDD ABC_6TM_ABCC_D2 283 576 IPR044726 GO:0140359
Stsc241675g00023 855 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241675g00023 855 Gene3D - 585 838 IPR027417 -
Stsc241675g00023 855 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 839 - -
Stsc241675g00023 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 834 IPR027417 -
Stsc241675g00023 855 MobiDBLite consensus disorder prediction 232 260 - -
Stsc241675g00023 855 CDD ABCC_MRP_domain2 600 820 - -
Stsc241675g00023 855 FunFam ABC transporter C family member 5 1 204 - -
Stsc241675g00023 855 Pfam ABC transporter transmembrane region 294 529 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241675g00023 855 CDD ABCC_MRP_domain1 3 172 - -
Stsc241675g00023 855 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 195 IPR003439 GO:0005524
Stsc241675g00023 855 FunFam ABC transporter C family member 3 585 837 - -
Stsc241675g00023 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 188 IPR027417 -
Stsc241675g00023 855 Pfam ABC transporter 2 124 IPR003439 GO:0005524
Stsc241675g00023 855 SMART AAA_5 2 172 IPR003593 GO:0016887
Stsc241675g00023 855 SMART AAA_5 628 820 IPR003593 GO:0016887
Stsc241675g00023 855 ProSitePatterns ABC transporters family signature. 97 111 IPR017871 GO:0005524|GO:0016887
Stsc241675g00023 855 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 836 IPR003439 GO:0005524
Stsc241675g00023 855 Pfam ABC transporter 619 767 IPR003439 GO:0005524
Stsc241675g00023 855 FunFam ABC transporter C family member 5 246 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241675g00023 Stsc-Chr241675 115820 122556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241675g00023 599 836 Calmodulin-binding Proteins AT2G36910 32.231 9.27e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241675g00023 - - gmx:100817486 1479.15