Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241674g00018 ATGGCCACTTCCGCCGCCGCCACAACCGCAGCAGCGCCGCGCCAGCTGTCGCAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCATCTTGGAACCAAAAACTGCGACTTCCAGATGGAACGCTACGTCTTCAAAAGGCGCAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTCGCCATCGAGAACCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGGGCAGTCTTGAAATTTGCCCAATATACAGGTGCGAATGCGATAGCTGGAAGACACACTCCCGGAACATTTACTAATCAGATGCAGACATCATATAACGAGCCACGCCTTCTCATCCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCCCTTGGAAATATTCCAACCATTGCCTTCTGTGACACGGACAGTCCAATGCGCTATGTCGATGTTGGCATTCCTGCCAATAACAAGGGAAAGCACAGTATTGGTTGTCTCTTTTGGTTATTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGTCCGGGTCTCAAGTGGGACGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGACTTTGGTGCCTCTGGCATTGCCAGCTTCCCCGCCGCTGATGGCGAATGGGGCAGTGTTGCAGCTGATCAACCCTGGCCTGCAGCAGTTCCTCAACAACCTATAGCAGCTGCCCCTGCTGACTGGGCCCCTGATGCTTCTGCAGCTGCAGGTGATTGGGAACCGGTTCCAGCTCCTCAGGCTTCCGTTCCTGCACCCGGAGGTGTTACTCCCACTGGTTGGGAATAG 933 0.5145 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGASGIASFPAADGEWGSVAADQPWPAAVPQQPIAAAPADWAPDASAAAGDWEPVPAPQASVPAPGGVTPTGWE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241674g00018 310 Gene3D - 22 227 - -
Stsc241674g00018 310 NCBIfam 30S ribosomal protein S2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc241674g00018 310 MobiDBLite consensus disorder prediction 274 310 - -
Stsc241674g00018 310 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 PANTHER 40S RIBOSOMAL PROTEIN SA 12 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc241674g00018 310 Hamap 40S ribosomal protein SA [rps-0]. 10 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Stsc241674g00018 310 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Stsc241674g00018 310 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc241674g00018 310 FunFam 40S ribosomal protein SA 22 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241674g00018 Stsc-Chr241674 79016 81376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241674g00018 5 302 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.572 3.77e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241674g00018 K02998 - gmx:100786575 444.891