LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241673g00054	ATGTCTTCCGACGATTCCCTATTTTCTGATTTATTTTCTTCCTCTCCACCACCTCCCTCTGATTCTTCCGATACCTCTTCCTCGCCCCCGCCTCCCTCAAACTCCTCACCTCCACCTCCACCCCCATCCTCATCCTCTCCACCTCCACCTCCGCCCAACGATGCTGATGGTTCCTCGTCCCCCCCGCCACCACCACCACCCAAGGAAGACGATTTCTCTTCCTCGTCTCCACCACCACCACGATCACCTCCTCCTCCACCACCCAGCGAATCAACACCACCGGCATCGGACGATGCTATTTCTCCCCCGCCACCGCCACCTTCACGTAGTCGATTAGGTCCATCAGGCAGGACAGGGCGTGGAGATAACAATGAATCAAAGTCGAAGGACGATAACAATGGGCCGCTGAGCACGACGGCTATAATAGGAATCGCAGCTGCAAGTGGTTTCTTGCTTCTTGTGATGATACTCTTCTTTGTGGTACGTGCAAGAAGAAAGAAAAGAGAGGATGCCCCCATTCGTTACTTCACTAATACCCAACCTAGCGGAGGAGGAGGTGGTCCGGGCGGATTTAATCGTGATGGTGACCATACTCTGAATATACCTCCACCGCCAGGTGCAGCGTGGGGAACACCATCAGGAGGCGGCGGAGCAGCTTGGGGAATGAATCCCCAGCAGCCATACAGCGGAAGCATGACGAGCAGCTCTAGTGGCTACTCTGGTGGTTCCCAAGGTTCGGTGTATCCACCACCACACCCTTCAGTAGCTCTAGGATTCAACCAGAGCACCTTCACCTTAGAGGAGTTATCCGTTGCCACCGGGGGCTTTTCGCAGGAAAACTTGTTGGGTCAAGGTGGGTTTGGATTTGTGCACAAAGGTGTCCTCCCCAATGGTAAGGAAGTTGCGGTGAAGAGCCTCAAAGCCACGGATGCTCAAGGAGATAGGGAGTTCCAAGCTGAGGTTGAGACTATTAGCCGTGTCCATCATCGCCATCTTGTCTCACTTGTTGGCTACTCCCTTTCCGAACAAAGGAAGATCCTTGTCTATGAATTTGTTCCTAACAAAACCCTTGAATCCCATCTTCATGGAAAGGGTCGACCTGTCATGGATTGGCCAACTAGGCTTAAAATTGCCACTGGAGCAGCCAAGGGACTTGCTTACTTGCATGAGGATTGTCATCCTCGTATAATTCATAGAGACATAAAGACCGCCAACATTCTGCTTGAAAATAACTTTGATGCCAAAGTGGCAGATTTTGGATTGGCAAAGTTCACTCAAGACACTAACACTCATGTTTCAACTCGTGTGATGGGAACATTCGGATATTTGGCTCCTGAGTATGCATCAAGTGGCAAGCTAACTGAGAAGTCTGATGTCTTCTCCTTTGGTGTTATGCTTCTAGAGCTGATTACAGGACGACCCCCACTAGACCACACTGGTGATTATGAAGAGGATAGTTTAGTTGATTGGGCTAGACCACTCTGTACAAAAGCAGTGGAAACTGGAGAATTTACAGGGCTGGTGGATGCACGTTTAGAGGACAATTATGACAAGCAGGAAATGAAAAATATGGTGGCTTGCGCTGGGGCCAGTGTTAGGCACTCAGCAAGGAGGCGCGCAAAAATGAGCCAGATTGTGCGAGTGTTGGAGGGGGATGTGTCACTAGATGTGCTTAATAACGAAGGAGTGAAACCAGGGCAAAGTGGTGTGATGGGTGAAAGCGGTGAATATGGTTCTGCAGCATACAGCGCAGACATGAAGAGGTTCAGGATGTTAGCGTTGGGGGAAAGTAGTGGAGTTGCATCCAGTGAGTATGGTGGAACCACCAGTGAATATGGGCTCAATGCATCTCCTTCAAGCAGTGACTCATCATCATCCACTGAATATACAAAGAGGGGATGA	1902	0.5021	MSSDDSLFSDLFSSSPPPPSDSSDTSSSPPPPSNSSPPPPPPSSSSPPPPPPNDADGSSSPPPPPPPKEDDFSSSSPPPPRSPPPPPPSESTPPASDDAISPPPPPPSRSRLGPSGRTGRGDNNESKSKDDNNGPLSTTAIIGIAAASGFLLLVMILFFVVRARRKKREDAPIRYFTNTQPSGGGGGPGGFNRDGDHTLNIPPPPGAAWGTPSGGGGAAWGMNPQQPYSGSMTSSSSGYSGGSQGSVYPPPHPSVALGFNQSTFTLEELSVATGGFSQENLLGQGGFGFVHKGVLPNGKEVAVKSLKATDAQGDREFQAEVETISRVHHRHLVSLVGYSLSEQRKILVYEFVPNKTLESHLHGKGRPVMDWPTRLKIATGAAKGLAYLHEDCHPRIIHRDIKTANILLENNFDAKVADFGLAKFTQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRPPLDHTGDYEEDSLVDWARPLCTKAVETGEFTGLVDARLEDNYDKQEMKNMVACAGASVRHSARRRAKMSQIVRVLEGDVSLDVLNNEGVKPGQSGVMGESGEYGSAAYSADMKRFRMLALGESSGVASSEYGGTTSEYGLNASPSSSDSSSSTEYTKRG	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241673g00054	633	FunFam	Proline-rich receptor-like protein kinase PERK1	352	560	-	-
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	224	244	-	-
	Stsc241673g00054	633	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	148	592	IPR047117	-
	Stsc241673g00054	633	SUPERFAMILY	Protein kinase-like (PK-like)	254	549	IPR011009	-
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	1	21	-	-
	Stsc241673g00054	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	396	408	IPR008271	GO:0004672\|GO:0006468
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	601	627	-	-
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	22	111	-	-
	Stsc241673g00054	633	ProSitePatterns	Protein kinases ATP-binding region signature.	282	304	IPR017441	GO:0005524
	Stsc241673g00054	633	Gene3D	Transferase(Phosphotransferase) domain 1	352	560	-	-
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	172	254	-	-
	Stsc241673g00054	633	ProSiteProfiles	Protein kinase domain profile.	276	537	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241673g00054	633	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	252	351	-	-
	Stsc241673g00054	633	Pfam	Protein kinase domain	277	482	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	1	135	-	-
	Stsc241673g00054	633	Gene3D	Phosphorylase Kinase; domain 1	253	351	-	-
	Stsc241673g00054	633	SMART	serkin_6	276	545	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241673g00054	633	MobiDBLite	consensus disorder prediction	600	633	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241673g00054	Stsc-Chr241673	253825	256175	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241673g00054	73	631	Trihelix Transcription Factor Family	AT1G70460	46.087	5.96e-152	453

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Stsc241673g00054		Pkinase	3.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241673g00054	-		-	gmx:100806299	644.425