Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00051 ATGGTGGATCGGTGGAGCAGAGTGTGGTTTTGGTTCTTGTTCTTGCTGCCTTTTGAGCTCACATTGGAGCAGCGATTTCAGCCACTCACTTCACCCACCGAGCGAGCAGCACTGCTCCAACTCAGGGGTTCTCTTGGAATCAGGAGCAAGGAATGGCCAAGAAAACCAGACCCTTGCTTGATGTGGATTGGTATCACTTGCCACAATGGTTCTGTTGTTGGGATCAACATCTCTCGCTTCAGAAGAACAAGGATTGGAAGGAGGAACCCCAAATTTGTAGTAGATGCTTTGGCCAATTTCACATTCTTGCAATCTTTCAATGCCTCCAATTTCATGCTCCCTGGTCCTATTCCATTCTGGCTTGGTCTTCGAATCCCTTCACTCACACTCCTTGATCTTCGTTCTTGTTCCATTACTGGTTCCATTCCATCCACTCTTGGCAGTCTAACCAACCTTACTGCCCTCTTTCTTTCTGATAACAACCTCACTGGTTTAGTTCCTGATACTTTGGGTCAGCTCTCTGCCCTTTCGGTTCTTGATCTTTCCAGGAACTCCCTAACCGGGGCCATGCCGGCATCTCTTGCCTTGCTTGTGAATCTTGCTTCCCTTGACATGTCTGCAAATTTTTTGGCAGGGCCTATTCCTGCGGGCATTGGTGCCCTTAACAAGTTGCAATATTTGAATCTTTCTGACAATGGCCTAACTTCTTTACCTTCCGAGCTTGGAGGTCTTAGTAGCTTAGTTGACCTTGATCTTACTAAGAATTTGCTACGTGGTGGGGTGCCTCCGGATTTGAGAGGGTTGAGGAGCTTGCAGAAAATGATGCTAGGGAACAACATGCTTGATGGGACTCTGCCTGGGAACTTGTTTACCACTTTATTGCAGTTGCAGTCTGTAGTGCTGAGACAAAATAATTTCAGCGGTTCTTTGCCTGTTGGGTTGTGGTCTCTGCCGAGATTAACCTTTATTGATGTCTCGGCGAATAACTTCAGTGGTCTGCTTCCTAATTCTAGTTCTAGTTTCCGTATGAATGCTACTGCTGCCGTGCTCAATATCTCTGATAACATGTTTTATGGTGGCCTCACTCCCCTGCTTAGAAGGTTCAGCTTCATTGATCTGTCAAACAATTATTTTGAGGGAAGGGTTCTTAATTTTTTGCATAAAGCATCTCTAGATAGCAACTGCCTTCAAAACACTACAAATCAGAGGAAAACAACTGAATGTGCATCATTCTATGCTCAGCGAGGGCTCATATTTGATAATTTTGGACACCCGAATGCCCAAAAACCTGCTGAAGCAACAAGCTCTAGAAAGAATGGTAAAACTAAGATTATATTAGCAGGAGTCTTTGGTGCACTGGGTTTAATTGCACTTCTGTTGTTGTTACTGGTACCATTGGTTATGTGCAGAAAGAGTGGTAATTCAAGTCAGCGCGGAAATGGTGTGGGACCTGCTCCTGCTGGAGCCAGCCCTTCGCAGACTGGTGTATCAGTCAATTTTTCTAATGTTGGGGACTCATTTACATATCATCAATTGCTCCAGGCCACAGGAGATTTCAGTGATTCAAATCTTATCAAACATGGCCACTCTGGGGATTTATACAACGGTATTTTGGAAAGTGGGATTCCTGTCATTATCAAAAGGATCGACATGCGTTCGGCTAAAAAGGATGCTTACGTATTGGAATTGGACTTTTTTAATAAGGTTTCTCATCAAAGATTTGTTCCCCTGTTGGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAAATATATGCCAAACGGGGACTTGTCTAATAGCTTATTCTACAAAAAGACTACATCTGATGATGGTACCTTGCAGTCATTAGACTGGATAACTAGGTTAAAAATTGCTACCGGAGCAGCAGAGGCCCTATCGTATCTGCATCATGAATGTATTCCGCCCTTTGTACACAGAGATATTCAAGCAAGCAGCATACTTCTAGATGATAAATATGAAGTTCGGTTAGGGAGTTTAAGTGAAGTTTGTGTTCAAGAAGGTGATACTCATCAAAGCAAAATTTCCCGGTTTCTGCGGTTGCCTCAGTCATCCGAACAAAGCTCATCTGGTCGTCAATCAACATCGACATGTGCCTATGACGTTTTTTGCTTTGGGAAAGTATTACTTGAGCTGGTGACTGGTAAGCTGGGCATCAGTGCTGCCAGCGATGGGGAAGTAAGGGAATGGTTGGATCAGATTCTACCCAACATTGCTATGTATGAGAAGGAGCTTGTGACAAAAATTATAGATCCATCTTTGGTCCTTGATGAGGATTTCTTAGAGGAAGTGTGGGCAATAGCCATTGTTGCAAGGTCTTGCCTGAATCCTAGAGCTTCGAGAAGACCCCCAATGAGATATATTCTAAAGGCTTTGGAAAACCCTCTGAAAGTTGTAAGGGAGGAACATGCCGGTTCTGCGCGGCTTAGAGCAACCTCTTCTAGAGGCTCTTGGAATGCCGCTTTGTTTGGTAGCTGGCGTCAGAGTTCATCCGATGTAACGCTGATTCCAGCAACCTCTGGTACAAAAGTAGAAGGACCTAGTAGTTTAAAACATTCAGGAACCACCGGCTCACAGTCACAAGGTAGCTTCCACAATGTTGGCGATATTTCATCGTCTAGGAGGCGCCATTCAAGAGACATATTCCCAGAGCCATCTGGGTCAAATGATGTAGAAAGGCTGGAGCAGGAATAG 2721 0.4432 MVDRWSRVWFWFLFLLPFELTLEQRFQPLTSPTERAALLQLRGSLGIRSKEWPRKPDPCLMWIGITCHNGSVVGINISRFRRTRIGRRNPKFVVDALANFTFLQSFNASNFMLPGPIPFWLGLRIPSLTLLDLRSCSITGSIPSTLGSLTNLTALFLSDNNLTGLVPDTLGQLSALSVLDLSRNSLTGAMPASLALLVNLASLDMSANFLAGPIPAGIGALNKLQYLNLSDNGLTSLPSELGGLSSLVDLDLTKNLLRGGVPPDLRGLRSLQKMMLGNNMLDGTLPGNLFTTLLQLQSVVLRQNNFSGSLPVGLWSLPRLTFIDVSANNFSGLLPNSSSSFRMNATAAVLNISDNMFYGGLTPLLRRFSFIDLSNNYFEGRVLNFLHKASLDSNCLQNTTNQRKTTECASFYAQRGLIFDNFGHPNAQKPAEATSSRKNGKTKIILAGVFGALGLIALLLLLLVPLVMCRKSGNSSQRGNGVGPAPAGASPSQTGVSVNFSNVGDSFTYHQLLQATGDFSDSNLIKHGHSGDLYNGILESGIPVIIKRIDMRSAKKDAYVLELDFFNKVSHQRFVPLLGHCLENENEKFLVYKYMPNGDLSNSLFYKKTTSDDGTLQSLDWITRLKIATGAAEALSYLHHECIPPFVHRDIQASSILLDDKYEVRLGSLSEVCVQEGDTHQSKISRFLRLPQSSEQSSSGRQSTSTCAYDVFCFGKVLLELVTGKLGISAASDGEVREWLDQILPNIAMYEKELVTKIIDPSLVLDEDFLEEVWAIAIVARSCLNPRASRRPPMRYILKALENPLKVVREEHAGSARLRATSSRGSWNAALFGSWRQSSSDVTLIPATSGTKVEGPSSLKHSGTTGSQSQGSFHNVGDISSSRRRHSRDIFPEPSGSNDVERLEQE 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00051 906 MobiDBLite consensus disorder prediction 847 906 - -
Stsc241673g00051 906 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 220 344 IPR046959 -
Stsc241673g00051 906 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Stsc241673g00051 906 SUPERFAMILY L domain-like 82 411 - -
Stsc241673g00051 906 SMART LRR_typ_2 173 196 IPR003591 -
Stsc241673g00051 906 SMART LRR_typ_2 149 172 IPR003591 -
Stsc241673g00051 906 SMART LRR_typ_2 221 244 IPR003591 -
Stsc241673g00051 906 SMART LRR_typ_2 268 292 IPR003591 -
Stsc241673g00051 906 SMART LRR_typ_2 317 340 IPR003591 -
Stsc241673g00051 906 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 31 190 - -
Stsc241673g00051 906 Gene3D Phosphorylase Kinase; domain 1 489 594 - -
Stsc241673g00051 906 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Stsc241673g00051 906 ProSiteProfiles Leucine-rich repeat profile. 223 245 IPR001611 GO:0005515
Stsc241673g00051 906 FunFam Predicted protein 489 594 - -
Stsc241673g00051 906 FunFam Putative LRR receptor-like serine/threonine-protein kinase 595 821 - -
Stsc241673g00051 906 Pfam Protein tyrosine and serine/threonine kinase 525 739 IPR001245 GO:0004672|GO:0006468
Stsc241673g00051 906 Pfam Leucine Rich Repeat 223 239 IPR001611 GO:0005515
Stsc241673g00051 906 Gene3D Ribonuclease Inhibitor 192 421 IPR032675 -
Stsc241673g00051 906 ProSiteProfiles Protein kinase domain profile. 519 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241673g00051 906 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 292 424 - -
Stsc241673g00051 906 FunFam Leucine-rich repeat receptor protein kinase EMS1 191 288 - -
Stsc241673g00051 906 MobiDBLite consensus disorder prediction 847 878 - -
Stsc241673g00051 906 SUPERFAMILY Protein kinase-like (PK-like) 497 801 IPR011009 -
Stsc241673g00051 906 Gene3D Transferase(Phosphotransferase) domain 1 595 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00051 Stsc-Chr241673 237710 242149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00051 33 692 Miscellaneous Gene Families AT2G16250 55.689 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Stsc241673g00051 PK_Tyr_Ser-Thr 1.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00051 - - gmx:100776587 1288.48