Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00050 ATGGCTTCTGCTGAAATTGAGTACCGTTGCTTCGTTGGTGGGCTTGCCTGGGCCACCGACAACGAAGCTCTCGAGAAAGCCTTCTCTTCCTATGGCGAGATCGTCGAATCCAAGGTTATCAACGATCGTGAGACTGGAAGGTCGAGGGGTTTTGGATTCGTAACCTTCGCCACAGAGCAGGCCATGAGGGATGCCATCGAGGGGATGAATGGTCAGAATCTTGATGGCCGTAACATCACTGTGAACGAGGCGCAGTCCCGCGGCAGGGGTGGAGGCGGTGGCGGTGGTGGATATGGAGGTGGTGGCGGTTACAGCCGTGGAGGAGGAGGAGGTGGTGGATATGGAGGCCGGCGTGAAGGTGGAGGTGGGTACAACCGTAGCGGTGGTGGAGGAGGCTATGGTGGTAACGGTGGAGGTGGCTATGGAGGAGGTGGTTACGGAGGTGGGCGAGACCGTGGGTACGGAGATGGTGGATCCCGTTACTCAAGGGGAGGTGGTGCTTCTGATGGAAACTGGAGGAATTAG 525 0.579 MASAEIEYRCFVGGLAWATDNEALEKAFSSYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGGYGGGGGYSRGGGGGGGYGGRREGGGGYNRSGGGGGYGGNGGGGYGGGGYGGGRDRGYGDGGSRYSRGGGASDGNWRN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00050 174 PANTHER GEO13361P1-RELATED 7 157 - -
Stsc241673g00050 174 FunFam Glycine-rich RNA-binding protein GRP1A 2 116 - -
Stsc241673g00050 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Stsc241673g00050 174 MobiDBLite consensus disorder prediction 83 102 - -
Stsc241673g00050 174 SMART rrm1_1 9 82 IPR000504 GO:0003723
Stsc241673g00050 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Stsc241673g00050 174 Gene3D - 2 105 IPR012677 -
Stsc241673g00050 174 CDD RRM2_NsCP33_like 9 84 - -
Stsc241673g00050 174 MobiDBLite consensus disorder prediction 121 174 - -
Stsc241673g00050 174 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00050 Stsc-Chr241673 231047 232509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00050 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 45.833 6.09e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00050 - K13195 gmx:100777821 165.622