Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00048 ATGTTGCACTGTCTCAACAGTAACGCTTCGGGAAATGGTGGTGCCGATATGACTCTCCTTCAAAGGCAAAGGGCAATCATCAAGTTCCAACAACACAACAACAATCATCATCAAGGATACTCTTCCTCCTCCTCCTCCTCTTCTTCTTCAGTCTCAGTTGTTCAAGTTAAGAGCTGCTCTCCTACCTGCCTTGCTGATCATGATCACTACTCCATCAAGCCTGACACTTGTGCTGTACCCTGGCCCAAGCTCGACAACAACTTTCTCATGGGATTCACCTCTTCTCCTTCAGGATTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTGATCTAAATTCCGCAATCTCAAGGACTTCCAGTTGTCCACTACCTTCTCTTGGTGACGGCAAACACACTAGTCCTCTTAATAACAAGAGAAAAACTGACAACCCTCACAACACCAAGGATGTTGCTTCAGATAACAAGGAGAAGAGGGTCAAAGTGGATGCTCACCATCACACACCAACTCCGGTCAAGAAAGCCACACAAGCCAGTGGAGATGATTCCAACAAGGATAATTCAAAAACTTGTCAGAAGCCAGATTACATTCATGTCCGAGCACGTCGGGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTTCTTGCAGGATTTAGTGCCCGGTTGCAACAAGATTACTGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTCCAGTCCCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTGAATCCAAGACTTGACTTCAACATTGATGATCTCTTTGCCAGAGAGGTGTTTCCTGCTTGTGCTGCAAGTTTTCCAGCAGTAGGAATGTCACCAGACATGGCTAACCCTGCTTCCTATCTTCACTTCAATTCCCCACCACAAATAGATGCAGGGATAAACCCTCAAGATATCAGTCTTCGAAGGAGCATAAGTGCCCCAGTATCCATGCCAGAAACCTTTCTTGATTCCTCCTGTTTCACTCAAAGTCTGCCCTCCTCAACATGGGAAGGTGATTTTCAAAACCTTTACAGTGTGGCTTTTGATCAAGCAAGAGCAGCATCATTTCCTTCTCAGCTATTCACAGGTCTACTTGAACCAAACAATCTAAAGATGGAGATGGAGATGTAG 1200 0.4533 MLHCLNSNASGNGGADMTLLQRQRAIIKFQQHNNNHHQGYSSSSSSSSSSVSVVQVKSCSPTCLADHDHYSIKPDTCAVPWPKLDNNFLMGFTSSPSGFPPPPPPPPPPPPFDLNSAISRTSSCPLPSLGDGKHTSPLNNKRKTDNPHNTKDVASDNKEKRVKVDAHHHTPTPVKKATQASGDDSNKDNSKTCQKPDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAREVFPACAASFPAVGMSPDMANPASYLHFNSPPQIDAGINPQDISLRRSISAPVSMPETFLDSSCFTQSLPSSTWEGDFQNLYSVAFDQARAASFPSQLFTGLLEPNNLKMEMEM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00048 399 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 308 IPR024097 GO:0006355
Stsc241673g00048 399 MobiDBLite consensus disorder prediction 92 196 - -
Stsc241673g00048 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Stsc241673g00048 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Stsc241673g00048 399 MobiDBLite consensus disorder prediction 96 114 - -
Stsc241673g00048 399 SMART finulus 213 263 IPR011598 GO:0046983
Stsc241673g00048 399 MobiDBLite consensus disorder prediction 115 135 - -
Stsc241673g00048 399 CDD bHLH_AtBPE_like 197 282 - -
Stsc241673g00048 399 Gene3D - 204 278 IPR036638 GO:0046983
Stsc241673g00048 399 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Stsc241673g00048 399 MobiDBLite consensus disorder prediction 136 172 - -
Stsc241673g00048 399 SUPERFAMILY Formin homology 2 domain (FH2 domain) 101 111 - -
Stsc241673g00048 399 FunFam Basic helix-loop-helix transcription factor 204 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00048 Stsc-Chr241673 211226 213559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00048 119 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 44.604 2.93e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241673g00048 HLH 5.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00048 - - gmx:100798855 367.081