LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241673g00033	ATGCCTACCGTCCTTATGATCATTGTGGTGTTGTTGATGATCTGTATCACATGCACAACATATGGTTTAAGCAGCTTCTCCCCGAAAGATAACTTCCTGATAGATTGCGCTGCTGAAAAAGTAGCAAGTCTCCCAGATGGAAGACAATTCAAAACAGATTCTGAATCGAAATCGTTCTTACAAGCAAGTGATGACACCAAAGTGACATCGAACGAGCCAATTCCGAACCTACCCTCCCCAATCTACTCAAACGCAAGGATATTCATTCAACAAGCTAAGTATTCATTCCCTCTCACTCAACCTGGTTTTCATTGGCTTCGCCTTCATTTCTATCCAATCAAGAACACTATCTTTGAACTTCACAAGGCCACCTTCTCTGTCAACACAGATAGGTTTGTTCTCCTTCATTCCTTCAACGTGGACAATGACACCCCTCTTCTCAAGGAGTTCCTCATCAACGCCACCGACCCTCACTTCTCCATATACTTCATTCCAACCAAGGACTCCGCAGCATTCATCAATGCCATTGAGCTTGTTTCAGCTCCTGATAACCTCATCTTCGACATTGCCTCATCGCTTTCCCCCGTTGGAGACTTTTCAGGCTTGACCAACTACGCTTTCCAAACGCTTCACCGCATCAACAATGGTGGTCCTCTGATAACTTCATCAAATGACACACTGGCAAGAACATGGCAATCTGATTCTGATGGATCTTATCTCACAAACAAGAACTTGGCGAAGAGTGTCTCTGTGGCTACCACTGCCATTAAGTTCCCTTCGAATACACCAACCATTTCTCCTCTAATTGCACCGCAGACAGTTTATGCTTCTGCCATGGAGATGGCCGATGCAGGTGTTGACGAGCCTAATTTCAACGTGTCGTGGAAATTTGATGTGGACACAGCTTTTGATTACCTTGTAAGACTGCATTTCTGTGATATTGTGAGCAAAGGGCTAAACCAACTCTACTTCAATGTATATGTGAATGGGAGAATGGCAATTCCCAATTTGGATTTGTCAGCTATTACTGGAGCCTTGGCAACACCTTATTACAAGGACATTGTGGTTAATGCTTCTTTGTTGTCTGAGGCGCTCACGGTTCAGGTTGGTCCTGCAAATGCTGAGGGTGGGAGTGGCAATGCAATTATGAATGGAATTGAGGTCTTGAAGATAAGCAATTCTGTGGACAGTTTGGATGGTGAATTTGGTGTTGATGGAAGAAAAGCCGGTGGTTCAAACCGCGGCAAGGTGGCTACAGTTGGTTTTGCAATGATGTTTGGAGCCTTTCTTGGTCTTGGTGCGATGGTTATCAAATGGAAAAGGAGGCCGCCAGATTGGCAAAAAAGGAAAAGTTTCTCTTCATGGTTACTCCCTGTGCATGCAGGTGACACAAGCTTCATGAATGGCAAGACCTCAGTGGGGTCTCACAAGAGCAATTTCCACTCCTCAACCATGGGACTAGGCAGGTTTTTCTCGCTTGCAGAGTTGCAAGAAGCTACCAAGAACTTTGACTCCAAAGAAATTATAGGTGTTGGAGGATTTGGTAATGTGTATTTGGGTGTGATTGATGAAGGGACTAAAGTTGCTGTTAAGAGAGGGAATCCACAATCAGAACAAGGCATCAATGAGTTCCAAACTGAAATTCAAATGCTGTCTAAGCTAAGACACAGGCATTTGGTTTCCTTGATTGGATACTGTGATGAAAACTCCGAGATGATTCTGGTTTATGAATACATGCCCAATGGACATTTCAGGGACCATCTTTATGGCAAGAACTTGCCTCCTCTTTCTTGGAAGCAGAGATTAGAGATCTGCATAGGAGCGGCTCGCGGCCTTCACTACCTCCACACAGGCACAGCACAAGGCATCATCCACCGTGATGTTAAGACCACCAACATTCTGCTTGATGAGAATTTCAACGCCAAGGTTTCTGATTTCGGGCTCTCCAAGGATGCACCAATGGGCCAAGGCCATGTCAGCACTGCCGTGAAGGGTAGCTTTGGATATCTTGATCCAGAGTATTTCAGGAAGCAACAGCTGACAGAAAAATCTGATGTGTATTCATTTGGGGTGGTGTTGCTTGAGGCGCTATGCGCGAGGGCGGCCATCAATCCTCAGTTGCCTAGAGAGCAAGTAAACTTGGCTGATTGGGCAATGCAGTGGAAGAGGAAGGGGATGATTGATAAGATTGTAGATCCTCATCTAGTTGGTTCTTTGAACGCTGAATCCATGAAGAAATTTGCAGAGGCTGCTGAGAAGTGCTTGGCAGATTATGGTGTTGATAGGCCTACAATGGGGGATGTGTTGTGGAACTTGGAGTATGCATTGCAGCTTCAAGATGCATTCACTCAAGGAAAGGCTGAAGATCCCAGCAACTCCACTGCTTCTGTTCCTGCCCCTCCAACGCTACCTCCTAATCAAAGCAATAATAATGATGATAATGCATCCAGCAGGGAACAGGAACCTCCTCTTCAACAAGTAAATGACAATAATGGATCAACACAAGTACCCTCTTCTACTGATGATTATTCTGGAACAATGTTTTCCCAAGTTAACAATCTTAGTGGTAGATGA	2574	0.4483	MPTVLMIIVVLLMICITCTTYGLSSFSPKDNFLIDCAAEKVASLPDGRQFKTDSESKSFLQASDDTKVTSNEPIPNLPSPIYSNARIFIQQAKYSFPLTQPGFHWLRLHFYPIKNTIFELHKATFSVNTDRFVLLHSFNVDNDTPLLKEFLINATDPHFSIYFIPTKDSAAFINAIELVSAPDNLIFDIASSLSPVGDFSGLTNYAFQTLHRINNGGPLITSSNDTLARTWQSDSDGSYLTNKNLAKSVSVATTAIKFPSNTPTISPLIAPQTVYASAMEMADAGVDEPNFNVSWKFDVDTAFDYLVRLHFCDIVSKGLNQLYFNVYVNGRMAIPNLDLSAITGALATPYYKDIVVNASLLSEALTVQVGPANAEGGSGNAIMNGIEVLKISNSVDSLDGEFGVDGRKAGGSNRGKVATVGFAMMFGAFLGLGAMVIKWKRRPPDWQKRKSFSSWLLPVHAGDTSFMNGKTSVGSHKSNFHSSTMGLGRFFSLAELQEATKNFDSKEIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEYMPNGHFRDHLYGKNLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFNAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRKQQLTEKSDVYSFGVVLLEALCARAAINPQLPREQVNLADWAMQWKRKGMIDKIVDPHLVGSLNAESMKKFAEAAEKCLADYGVDRPTMGDVLWNLEYALQLQDAFTQGKAEDPSNSTASVPAPPTLPPNQSNNNDDNASSREQEPPLQQVNDNNGSTQVPSSTDDYSGTMFSQVNNLSGR	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241673g00033	857	MobiDBLite	consensus disorder prediction	783	857	-	-
	Stsc241673g00033	857	Pfam	Protein tyrosine and serine/threonine kinase	506	710	IPR001245	GO:0004672\|GO:0006468
	Stsc241673g00033	857	FunFam	receptor-like protein kinase FERONIA	467	578	-	-
	Stsc241673g00033	857	Gene3D	Transferase(Phosphotransferase) domain 1	579	795	-	-
	Stsc241673g00033	857	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	623	635	IPR008271	GO:0004672\|GO:0006468
	Stsc241673g00033	857	FunFam	Receptor-like protein kinase FERONIA	206	393	-	-
	Stsc241673g00033	857	MobiDBLite	consensus disorder prediction	806	857	-	-
	Stsc241673g00033	857	SMART	serkin_6	503	775	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241673g00033	857	Gene3D	Phosphorylase Kinase; domain 1	466	578	-	-
	Stsc241673g00033	857	CDD	STKc_IRAK	509	773	-	-
	Stsc241673g00033	857	ProSitePatterns	Protein kinases ATP-binding region signature.	509	531	IPR017441	GO:0005524
	Stsc241673g00033	857	SUPERFAMILY	Protein kinase-like (PK-like)	487	770	IPR011009	-
	Stsc241673g00033	857	FunFam	Receptor-like protein kinase FERONIA	579	792	-	-
	Stsc241673g00033	857	ProSiteProfiles	Protein kinase domain profile.	503	775	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241673g00033	857	FunFam	Putative receptor-like protein kinase	31	182	-	-
	Stsc241673g00033	857	PANTHER	OS07G0166700 PROTEIN	489	779	IPR045272	GO:0004714\|GO:0006468
	Stsc241673g00033	857	Gene3D	-	31	182	-	-
	Stsc241673g00033	857	Gene3D	-	205	393	-	-
	Stsc241673g00033	857	Pfam	Malectin-like domain	34	390	IPR024788	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241673g00033	Stsc-Chr241673	172976	175549	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241673g00033	24	857	Receptor kinase-like Gene Family	AT4G39110	65.083	0.0	1142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc241673g00033		Malectin_like	3.3e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241673g00033	-		-	gmx:100790759	1318.14