Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00030 ATGGCTAAACCCAAGGCTCCACGCCGAACCCTAGACACATACACAGTCAAACACATTAACAAAACCGTTAGAGCCGGGGATTGCGTGCTCATGCGCCCCTCTGATCCATCCAAACCGTCGTACGTGGCCAGGATCGAGCGGATCGAAGCTGACTCCCGAGGGGCCAACGTGAAGCTGCACGTCCGCTGGTACTACCGCCCGGAGGAGTCAATCGGTGGGCGCCGCCAGTTCCATGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATCTTCAGAGCGCCGACACCATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACCAAGCTCGATGCTGTTGGAAGCGACGATTTCTTCTGTCGTTTCGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGACAGAGTTGCTGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGGGCTGCAGTGATTGGTTTCACCCTGCTTGTATAGACATGACTGTGGAGGAAGCTAAACGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAGAAGCTGCAAAATTCTCATTCTACTTCAAGACTCTCAGATACAAAGGTGGAGACTAAACGACGGCGAAGGTCATAA 654 0.5199 MAKPKAPRRTLDTYTVKHINKTVRAGDCVLMRPSDPSKPSYVARIERIEADSRGANVKLHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDLQSADTIEAKCTVHSFKSYTKLDAVGSDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSTSRLSDTKVETKRRRRS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00030 217 SMART BAH_4 21 137 IPR001025 GO:0003682
Stsc241673g00030 217 PANTHER OS08G0421900 PROTEIN 5 208 - -
Stsc241673g00030 217 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Stsc241673g00030 217 SMART PHD_3 141 188 IPR001965 -
Stsc241673g00030 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Stsc241673g00030 217 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Stsc241673g00030 217 Pfam PHD-finger 141 189 IPR019787 -
Stsc241673g00030 217 Gene3D - 2 135 IPR043151 -
Stsc241673g00030 217 Pfam BAH domain 22 136 IPR001025 GO:0003682
Stsc241673g00030 217 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Stsc241673g00030 217 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Stsc241673g00030 217 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Stsc241673g00030 217 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00030 Stsc-Chr241673 165540 169139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00030 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 5.78e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc241673g00030 BAH 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00030 K25868 - gmx:100787968 437.187