Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00027 ATGCTAACGGGAACAAACAGGAGTAGAGAAGAAGAAGAAGAAGAAGAAAGAGGGATAAAGGTGGTGGGTCAAAGTAGTTCAAGAAAGTGCCAAGACTGTGGGAACCAAGCGAAGAAGGAGTGTTCATATTGGAGGTGCAGAACCTGCTGCAAGAACAAAGGCTTCCATTGCCAAACCCATATCAACAGCACTTGGGTCCCCCTCCACACAAGGCGCCAAAGGGAAGATTTAGATAGTAACCACCAGTTTGAGTTGCACCACCCAATTCCACCGTCACATATCTCCAAAAAGCACAAACAACAACACTACTCATCACCATCACCTGCACCTGCAGGTGTAGACAAGTTAAAGTTCCCATCTGCTACGAATTCCATGGCTGTATTTCGGCGCGTTGAGGTTAGGTCCATGGATGATGCCGTTAACGAAATCGCCTATCAAACATGTGTCAACATTGGAGGTCATGTATTTACTGGTCTTCTATATGATCAAGGCCCTGATTTTCTTGATCATCATCAGCAGCAGCAGAATCTCAATCATGGTGCAATTATGCCTCCAGATCATGATCATAATGATGAGCCTTTCTTGCCACCTCCACCACCTTCAGAGGCGCTATGTACGCCCTACTTCCCATTCCCAAAACCATAG 645 0.4605 MLTGTNRSREEEEEEERGIKVVGQSSSRKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHINSTWVPLHTRRQREDLDSNHQFELHHPIPPSHISKKHKQQHYSSPSPAPAGVDKLKFPSATNSMAVFRRVEVRSMDDAVNEIAYQTCVNIGGHVFTGLLYDQGPDFLDHHQQQQNLNHGAIMPPDHDHNDEPFLPPPPPSEALCTPYFPFPKP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00027 214 MobiDBLite consensus disorder prediction 89 110 - -
Stsc241673g00027 214 MobiDBLite consensus disorder prediction 1 21 - -
Stsc241673g00027 214 MobiDBLite consensus disorder prediction 178 198 - -
Stsc241673g00027 214 Pfam Domain of unknown function (DUF702) 27 166 - -
Stsc241673g00027 214 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 179 IPR007818 GO:0003700|GO:0006355
Stsc241673g00027 214 NCBIfam LRP1 C-terminal domain 117 165 IPR006511 -
Stsc241673g00027 214 NCBIfam putative zinc finger domain, LRP1 type 29 70 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00027 Stsc-Chr241673 150059 150782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00027 28 186 C2H2 Transcription Factor Family AT2G21400 47.273 2.43e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc241673g00027 DUF702 3.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00027 - - pvu:PHAVU_009G004300g 177.948