Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00026 ATGAAGATCCAGTGTGATGTGTGTGACAAAAACGAGGCTTCTCTATTCTGCCCTGCAGATGAAGCCGCTCTCTGCCATGCCTGTGACCGTACAATCCACCATGCTAACAAGCTCGCAACCAAGCACACGCGCTTCACTCTCCACCACCCTTCCTCTAAAGACACCCCTCCTCTCTGTGACATCTGCCAAGACAGGCGTGCATATCTCTTCTGCAAAGAAGACAGAGCCATACTTTGCAGAGAATGCGACCTTCCTATCCACAAAGCCAACCACCACACCCAGAACCATACCAGGTTCCTTCTCACCGGTCTCAAGCTCTCTTCTACCTCCTTCCACACCGCTGATGCTTTCAGATCATCCAATAATAATAATAATGAACACAACATCAACATCCCTGGGGCTACTACTAGTAATAGTGACACCGGTTCCGATTCCACAAGCAGCATATCCGAGTACTTGATTGAAACCATTCCCGGCTACTGCTTCGAAGACCTTCTCGATGCCTCCTTTCCACATAATAATGGTTTCTGTAAGGATCAACATCTTCATGTCAGTGACACCATGTGTTCATTATTTTCATTGCTACAATTTTTCAAGTTCAATTCCCTAAACCTACCACTTGGATTGTTTCCCAGATTAGTTCTGTAG 648 0.463 MKIQCDVCDKNEASLFCPADEAALCHACDRTIHHANKLATKHTRFTLHHPSSKDTPPLCDICQDRRAYLFCKEDRAILCRECDLPIHKANHHTQNHTRFLLTGLKLSSTSFHTADAFRSSNNNNNEHNINIPGATTSNSDTGSDSTSSISEYLIETIPGYCFEDLLDASFPHNNGFCKDQHLHVSDTMCSLFSLLQFFKFNSLNLPLGLFPRLVL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00026 215 CDD Bbox1_BBX-like 5 47 - -
Stsc241673g00026 215 SMART bboxneu5 54 101 IPR000315 GO:0008270
Stsc241673g00026 215 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc241673g00026 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc241673g00026 215 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Stsc241673g00026 215 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Stsc241673g00026 215 Gene3D Classic Zinc Finger 1 96 - -
Stsc241673g00026 215 MobiDBLite consensus disorder prediction 119 143 - -
Stsc241673g00026 215 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Stsc241673g00026 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 182 - -
Stsc241673g00026 215 CDD Bbox1_BBX-like 58 101 - -
Stsc241673g00026 215 FunFam B-box zinc finger protein 21 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00026 Stsc-Chr241673 145033 146030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00026 1 178 C2C2-CO-like Transcription Factor Family AT1G75540 50.242 3.70e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc241673g00026 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00026 - - adu:107458960 295.434