Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00025 ATGAAGATCCAGTGTGATGTGTGTGACAAAAACGAGGCTTCTCTATTCTGCCCTGCAGATGAAGCCGCTCTCTGCCATGCCTGTGACCGTACAATCCACCATGCTAACAAGCTCGCAACCAAGCACACGCGCTTCACTCTCCACCACCCTTCCTCTAAAGACACCCCTCCTCTCTGTGACATCTGCCAAGACAGGCGTGCATATCTCTTCTGCAAAGAAGACAGAGCCATACTTTGCAGAGAATGCGACCTTCCTATCCACAAAGCCAACCACCACACCCAGAACCATACCAGGTTCCTTCTCACCGGTCTCAAGCTCTCTTCTACCTCCTTCCACACCGCTGATGCTTTCAGATCATCCAATAATAATAATAATGAACACAACATCAACATCCCTGGGGCTACTACTAGTAATAGTGACACCGGTTCCGATTCCACAAGCAGCATATCCGAGTACTTGATTGAAACCATTCCCGGCTACTGCTTCGAAGACCTTCTCGATGCCTCCTTTCCACATAATAATGGTTTCTGA 531 0.4859 MKIQCDVCDKNEASLFCPADEAALCHACDRTIHHANKLATKHTRFTLHHPSSKDTPPLCDICQDRRAYLFCKEDRAILCRECDLPIHKANHHTQNHTRFLLTGLKLSSTSFHTADAFRSSNNNNNEHNINIPGATTSNSDTGSDSTSSISEYLIETIPGYCFEDLLDASFPHNNGF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00025 176 CDD Bbox1_BBX-like 5 47 - -
Stsc241673g00025 176 Gene3D Classic Zinc Finger 1 96 - -
Stsc241673g00025 176 SMART bboxneu5 54 101 IPR000315 GO:0008270
Stsc241673g00025 176 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc241673g00025 176 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc241673g00025 176 MobiDBLite consensus disorder prediction 118 145 - -
Stsc241673g00025 176 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Stsc241673g00025 176 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Stsc241673g00025 176 FunFam B-box zinc finger protein 21 1 99 - -
Stsc241673g00025 176 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Stsc241673g00025 176 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Stsc241673g00025 176 CDD Bbox1_BBX-like 58 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00025 Stsc-Chr241673 145033 146030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00025 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 50.500 1.07e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc241673g00025 zf-B_box 8.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00025 - - adu:107458960 275.018