Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00018 ATGGATGCTGATGACGAGGAAGCTCAGCACCTACAACACTCTTATCCACTCCCATACCTCTCTACCACTTCACCACAATGCCCACCCTCCGGAGTGGACCCGCTTGATTCGGCCACCACCGCTGATAATAAAGAAACTCTTGTTGGAGAAGCGGAACAGGCAGCTGTTGCAGCCAATTCGGGCGAAGCGGTTGAAGAGGCGGTGGAGGAGACAGAGATTGGCGATTCGGGAAACGCAGGAGAAGGAGAAATGCAAGTGATGGAAGATAAGGTTGTAGTTGAGGGTGATGATGGGGAGAATGAACAACTCCAACGACAAGAGGATGAGATTATGGCAGAGGCAACCGTCGTGGCGAAGGTGGAAAGGGAGGAAACTCCGTTGGTAGCTGAGGACGAAATCAGGGATGCTGAGTATAACGCGGTGGAGCAGACGGAGGTACCAAATGAAGCTGCTTTCGCGGTAGAAAGAGAAGAAGAAGAACAAGGAAAAGAAGAGTTAGAAGAAGAAGAGGAGGAGGTGGAAAGGGAGAAAGTTGATGCCGCTAGCGATATGGCAAATGAAGCTGCTTTATCGGAAGAACCGGAACAAGTCCTAGGACAGCAGCAAGAGAATGCAGACGCCGATGTTGTTGGTGGTGTTGTAGCTAATGAAGCTACTTTCATCCAAGTACACGAAGGAGGACAGCAACAACAAGACGATGCTGATTTTGGTGGTGGCATATCAAATGAAACTGCTTTCATGGAAGAGCAAGATGAAGAAGATAAACAAGGAGGAGATGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGCGGTGATGATATAGCAAATGAAGCTGCTTTGACAGACGAACAGGAAGAAGAACAAGCCGATGCTGGTGGTGATATGCCAAATGAAGCTGCTTTCACGGAAGAACATGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGCTGATGATGGTGGCAATGTAGGGCGCATGGGAGAAGAGACAGGGCCCGGTGAAGAGAGGGAGGAAGTGGAGGAACAGAGTACAAGTGTGAGTGGTGGGAAGAGGAAGCGGGGAAGTGGGAAGAATTCCAAGTCCACAGGGAGAGCCCCGTCAAGGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTCGACGGGGGTGAGCTTGTTCTTTGCGACCGCAGGGGGTGCCCTAAGGCTTACCATCCTTCCTGCGTTAATCGTGATGAAGCCTTCTTCCGAGCCAAGGGGAAATGGAATTGTGGTTGGCATATTTGCAGTAACTGTGAGAAGAATGCTTACTACATGTGTTATACATGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACGTGCATGAGAACTGTAATGTTGATTGAACAGAAGAATCAGGAAAACATGGGACAAGTGGATTTTGATGACAGAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTCTGACTTTTGATGAACTCACACAAGCTAAAAACCCTTGGAAGGGATCTGATGTGCTTCCTTCTAAAGAGGGATCAGCAGATGAATTTCTTGATGCCAATAATGATAGAGGATCTGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGTCGTCCCAAAAGAAAAAAGGGCAAGAAACGGACAAAGTCCCGTTCCAAGGAAGGGACTTCATATGAGTATATTAAAAGAAATAAGCTTAGAGATCCTCGTAGAAAAAGCCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGGCATTTTGAAATGCTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAAGATTCTCAGACTGAAGATATGCAGGGAAGTGTTCTTGATAATGAAATTAGTCATTTGGAAGGTGATGGCATCTCAGATTCATATGTGAAAGCTGGCAAAGATAAGAGACGTAAAACTCGTAAAAAAGGTGATGAAAGAGGACTTCAAACTAATGTGGATGATTTTGCTGCCATTGATAATCATAATGTTAATTTAATATATCTCCGACGTAACTTGGTGGAAGAGCTGCTTGAAGATACAGAAAAGTTTCATGATAGAGTTGTTGGTGCTTTTGTGAGAATAAGGATCTCGGGTAGTGGCCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGGACATGCAAAGCAGCAGAACCATATAAAGTTGGTAAAAGGATGACAGATCTCTTGCTAGAAATATTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATTTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGACTCCGCCAAAGCATAAAGTGTGGGCTCATAAATCGGTTGACACTGGGTGACATTCAGGAAAAAGCATTGGCGCTTCAGGCAGTTAGAGTAAATGATTGGCTTGAAACAGAGATAGTGCGGTTAAGTCATCTCCGTGACAGAGCCAGTGAGAAGGGACGCAGAAAAGAGCTCAGAGAATGTGTTGAGAAGTTGCAACTTCTGAAGACTCCTGAAGAACGACAACGCAGATTGGAGGAAATTCCAGAAATTCATGTGGATCCTAACATGGATCCAAGTCATGAGTCTGAAGAAGATGAAGATGAAATGGATGAAAAACGACAAGAAAACTACATGAGACCTAGAGGATCTTCTGCATTTGGAAGGAGGGGAAGAGAAATTATTTCTCCTAGGAGTGGTCCTATTTCAAGTGATTCCTGGAGTGCCACGCGGAATTATTCTAATGTCAATCGTGAACTTAGCAGAAATCTGTCGAACAAAGGGTTTTCAAGCAAAGGCGAAGATGTTTCCATTTCTAGTGAAGTACTAAATGATGCTCAATTTCCCCAGGGAAGAGATTGGGGTTCACAATCTAGTGGCCTGGAGAGGCAGAAGCTTTCTTCAAGCTTTGAAAGTGGTGCTAAAAGTAACCTGCTGTTATCAACACCTGAGCGTTTTTCTACTGCTTTGTCAGAAACTTCTGCAGTGCTGTCTTCTGCGGGAGCAGCTCTGCCAGTTATGAAAATAAATGAAAGTGAAAAAATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAGGGGCCCTTTTCTATGGTCCAGCTACGCAAATGGAATAACACAGGGTACTTTCCTGCTGATTTGAGGATTTGGAAAGCCAGTGAGAAGCAAGATCACTCTATGCTCTTAACTGATGCCTTAGCAGGAAAATTTCCTACTGTGCAAGCAATGGTGGATAAAACTCCTCCTAAGGCTCAATCAATGATTGATCCCCATTACTCATCTTCATACTCTGGAAAGTCTCATTTGGGTACACAAGCTATGGAAGGTCAAGCTGGAGGAAGACTATCATTTGAGCAAAATAGTGGATCTAATAATCCTCTTGGTTCTCCTGGACAGAGTGCAACAGGAAGTTGGAGATCTAAAGATAGCATGAATTCTTTAGCAAGTCGACCTTCTTCATTGGCAGTTGAAGTTCCCAAGAATCCTGCAAATGGTTGGAGTTCTGATGCTGGACTCAGAAATGATTCAACAAATCTTCCTTCACCTACACCCCAGTCTGCTTCAGGTGGGACTAGGATGCAGGCTTTTGAAAATAAATGGTCTCCAACTCCAACCCCAACCCCTGTCCAACCGGCTGGTTCTCTCTTAGGAAATTCACTCTCTGTTGGGCCTGAAAGTCGTTCAAGTTCACAACCTGGAGTGGCATCAGTATCTAAATCGGATAATAATCAAGTACATCTTCATGCAGTAGCACCTATGGTTGCTTCAGGTATTGACATTCAGACAGCAGGTGCACACTTGCAAAGTCAGAATGTCAGTAACCATACTTCCCGTGCCGAAGCTCATCAGGGTTGGGGCTCTGGTGCGGTTCCCAAGCCTGAAGTACAGACATGGGGAGGTGCTCAACCTCAAAGGATAGAACCAAATAATCCAGTTACTATGCCTGCACAGCCAGCTTCCCATGGCCTCTGGGTTGATACATCATCCGTTCAGAACTCTGCATCATATAGCAATGGAAATCCTAATGGAGCCTTCCCCACACCGAGCTTTCCAGGCATGACTACACCTACACCTACGGCTGAGCCATGGAGACCGCCGGCTTCAAATAGTCAGTCAAACATAGCAGCAGCAGCACCATCCATTGTACCTTATGCTGGTTGGGGTATGCCAGGAAATCAGAATATTAACTGGGGTGGACCTCTACCTGCAAATGTGAATGTTAACTGGATGCATGGACAGGGGCCAGGACCTGGTAATGCAACTCCGGGATGGCGTGCTCCTAGCCAGGGACCACCTCCAGTAAATGCTGTTGGCTGGGTTGCACCTGGTCAAGGACGTCCACATGCAAATGCAAATGCAGGTTGGGTTGCGCCTGGTCAAGGGCCAACAGCTGGCAGTACAAATCCTGGTTGGGGATCTTCATCGGGGAATCCAGGCACGTGGGGGGGCGAGCAAAGTCGCAATGGAGAGAGATTCCACAGCCAGGGCGATCGTGGAACACATGGTGGAGATTCTGGTTATGGAGGTAAATCCTGGAACAGGCAGTCATCATTTAATGGCAGCGGAAGAGGAGGTTCCTCCAGGCTTCCTGTTGGGGGACAAAGAGGAGTCTGCAAGTTCCATGAGAGTGGACATTGCAAGAAGGGAGCTTCCTGTGATTTTATGCATCCTTAA 4725 0.455 MDADDEEAQHLQHSYPLPYLSTTSPQCPPSGVDPLDSATTADNKETLVGEAEQAAVAANSGEAVEEAVEETEIGDSGNAGEGEMQVMEDKVVVEGDDGENEQLQRQEDEIMAEATVVAKVEREETPLVAEDEIRDAEYNAVEQTEVPNEAAFAVEREEEEQGKEELEEEEEEVEREKVDAASDMANEAALSEEPEQVLGQQQENADADVVGGVVANEATFIQVHEGGQQQQDDADFGGGISNETAFMEEQDEEDKQGGDEEEEEEEEAGGGDDIANEAALTDEQEEEQADAGGDMPNEAAFTEEHEEEEEEEEEEEADDGGNVGRMGEETGPGEEREEVEEQSTSVSGGKRKRGSGKNSKSTGRAPSRKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHICSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQKNQENMGQVDFDDRSSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDVLPSKEGSADEFLDANNDRGSDSDSSYENVDLSRPKRKKGKKRTKSRSKEGTSYEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDMQGSVLDNEISHLEGDGISDSYVKAGKDKRRKTRKKGDERGLQTNVDDFAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDLLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTLGDIQEKALALQAVRVNDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSHESEEDEDEMDEKRQENYMRPRGSSAFGRRGREIISPRSGPISSDSWSATRNYSNVNRELSRNLSNKGFSSKGEDVSISSEVLNDAQFPQGRDWGSQSSGLERQKLSSSFESGAKSNLLLSTPERFSTALSETSAVLSSAGAALPVMKINESEKMWHYQDPSGKVQGPFSMVQLRKWNNTGYFPADLRIWKASEKQDHSMLLTDALAGKFPTVQAMVDKTPPKAQSMIDPHYSSSYSGKSHLGTQAMEGQAGGRLSFEQNSGSNNPLGSPGQSATGSWRSKDSMNSLASRPSSLAVEVPKNPANGWSSDAGLRNDSTNLPSPTPQSASGGTRMQAFENKWSPTPTPTPVQPAGSLLGNSLSVGPESRSSSQPGVASVSKSDNNQVHLHAVAPMVASGIDIQTAGAHLQSQNVSNHTSRAEAHQGWGSGAVPKPEVQTWGGAQPQRIEPNNPVTMPAQPASHGLWVDTSSVQNSASYSNGNPNGAFPTPSFPGMTTPTPTAEPWRPPASNSQSNIAAAAPSIVPYAGWGMPGNQNINWGGPLPANVNVNWMHGQGPGPGNATPGWRAPSQGPPPVNAVGWVAPGQGRPHANANAGWVAPGQGPTAGSTNPGWGSSSGNPGTWGGEQSRNGERFHSQGDRGTHGGDSGYGGKSWNRQSSFNGSGRGGSSRLPVGGQRGVCKFHESGHCKKGASCDFMHP 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00018 1574 Coils Coil 298 318 - -
Stsc241673g00018 1574 SUPERFAMILY Plus3-like 683 812 IPR036128 GO:0003677
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1319 1367 - -
Stsc241673g00018 1574 SUPERFAMILY SWIB/MDM2 domain 576 627 IPR036885 -
Stsc241673g00018 1574 SUPERFAMILY FYVE/PHD zinc finger 372 425 IPR011011 -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 965 984 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1184 1220 - -
Stsc241673g00018 1574 Coils Coil 103 123 - -
Stsc241673g00018 1574 FunFam Zinc finger CCCH domain-containing protein 19 365 465 - -
Stsc241673g00018 1574 SMART gyf_5 1031 1086 IPR003169 GO:0005515
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 329 347 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 857 926 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1284 1389 - -
Stsc241673g00018 1574 Pfam Plus-3 domain 687 790 IPR004343 GO:0003677
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 246 292 - -
Stsc241673g00018 1574 Pfam GYF domain 1033 1074 IPR003169 GO:0005515
Stsc241673g00018 1574 ProSiteProfiles GYF domain profile. 1030 1084 IPR003169 GO:0005515
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 222 237 - -
Stsc241673g00018 1574 ProSitePatterns Zinc finger PHD-type signature. 376 436 IPR019786 -
Stsc241673g00018 1574 SUPERFAMILY GYF domain 1022 1083 IPR035445 -
Stsc241673g00018 1574 SMART rtf1 682 792 IPR004343 GO:0003677
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 160 176 - -
Stsc241673g00018 1574 ProSiteProfiles Plus3 domain profile. 682 815 IPR004343 GO:0003677
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1526 1541 - -
Stsc241673g00018 1574 Gene3D SWIB/MDM2 domain 563 631 IPR036885 -
Stsc241673g00018 1574 FunFam Zinc finger CCCH domain-containing protein 19 1032 1089 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 301 319 - -
Stsc241673g00018 1574 ProSiteProfiles Zinc finger PHD-type profile. 373 439 IPR019787 -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1104 1121 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1460 1552 - -
Stsc241673g00018 1574 CDD GYF 1030 1085 IPR003169 GO:0005515
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1284 1298 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1478 1506 - -
Stsc241673g00018 1574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 468 IPR013083 -
Stsc241673g00018 1574 SMART swib_2 548 626 IPR019835 -
Stsc241673g00018 1574 CDD SWIB-MDM2_like 576 621 - -
Stsc241673g00018 1574 Coils Coil 149 186 - -
Stsc241673g00018 1574 Gene3D - 1031 1091 IPR035445 -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1 42 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1227 1260 - -
Stsc241673g00018 1574 Gene3D - 684 812 IPR036128 GO:0003677
Stsc241673g00018 1574 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 576 1574 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 15 30 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 857 876 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 55 84 - -
Stsc241673g00018 1574 Pfam SWIB/MDM2 domain 576 621 IPR003121 -
Stsc241673g00018 1574 ProSiteProfiles SWIB/MDM2 domain profile. 543 623 IPR003121 -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1131 1169 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 569 584 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 534 584 - -
Stsc241673g00018 1574 SMART PHD_3 375 421 IPR001965 -
Stsc241673g00018 1574 FunFam Zinc finger CCCH domain-containing protein 19 683 812 - -
Stsc241673g00018 1574 CDD PHD5_NSD 375 420 - -
Stsc241673g00018 1574 CDD Bbox1 421 447 - -
Stsc241673g00018 1574 ProSiteProfiles Zinc finger C3H1-type profile. 1549 1574 IPR000571 GO:0046872
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 1100 1260 - -
Stsc241673g00018 1574 MobiDBLite consensus disorder prediction 140 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00018 Stsc-Chr241673 96199 105948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00018 373 460 PHD Transcription Factor Family AT5G36670 31.000 2.27e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Stsc241673g00018 Plus-3 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00018 - - adu:107458951 2343.93