Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00013 ATGGAGGCGGAGTTGCCGGGACACGAAGCAGCGGCGGTTGAGGTAACCGCTCAGCAACTTGTGGCCAGGGCCATAGCTCCCATCAAGAAGGAGTTCCTTCGACCACCACCTCTTCGCTCTTCCTCCGCCGCCCCCAATGATAATAAGAAGAACCCTGCTCATTCTGGTTCGGGTCTCCTCAAGGACAACAAGTCCAAGCGTCAGCTCAAGCGTGAACGCCGTGAGGAGCAAAAGTCAGCACGAAACCTCTGCCCAGAACTTGCAAAGACTGGTGATGTTACTTCCTGTCCTTATAACGATAAATGCCGCTTCAGCCATGATATTGAAGCCTTCAAGGCCCAGAAACCAGCTGATCTAGATGGCCAATGTCCTTTTCTTAAGTCTGGAGGGCCTTGCCCTTATGGGTTAGCATGTAGATTTTCGAGTACCCATGAAGATGCTGTGCCTTCTTCTACTGGCCATCTCAACGGTCTTATGAGCAGTTCTGAGGTTAATGGATTGACCAAAGATGTTCAGAAGCTTTTGTGGAAAAATAAGATGAGGTTCTCCAAGGCTGATGCCAGACTCAAAAGTCTTGGCCTCCTGGGCCCCTCTAAGTCAAAAATGAAGGACTTGGAAAATAAAGAAGCTGAAAATGGCGGTTCAAATAAATGTGGTCGTTCTGATGACAATGGGTCTTGTGAAATAGCCTCTGACTTGGGCCCTAAGTTGGAAGAAGCTATAAAGGATGATGCTGATGCAAAATCTGGATCCGATGAACTTTGTCCCCAGAAAAGAAGAAAAACTGAAGTAAAATGTGATCCTAGTGAGACAGAAAATGAAGATGTGAATGTTACTGAAGAAGTTGCTGAAATAAGCAGCATAAATGTTGAACCAGAAGCAGGATGTGATGCTAAAACCATAGAAACTGATCTAAGTCTGAAGTTGCATCCACGTGAAAAGAAGCTTATTGATTTTAGGGAGAAATTGTATCTTGCACCCTTGACCACAGTTGGAAATCTACCTTTCAGGAGGGTTTGCAAAGTATTAGGAGTTGATGTAACATGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCTGAATGGGCATTGCTAAGACATTTTATTGATATAAATATGGGTTGTCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTGACAAAACCAATGCGAATGAAAAATATTGTTGATGTAGCTTCAAGCACAGTGGAAAAACCAATAACTATCAAGGTGAGGACTGCTTATTTTGAAGGGAAGAATCGCATTGATTCTCTTATTGCAGACATGGGCTCTTGGGGCGCTAGTGCAGTAACAATCCATGGAAGGTCACGTCAACAGCGCTATAGCAAGCTTGCTGATTGGGAATACATATACCAGTGTGGTAGGAAGGCCCCTAAGACATTGCAAGTAGTGGGGAATGGGGATGTTTTTTCATTTCTAGACTGGAATAACCACAGAACTGCATGTCCTGAACTTGCTACCTGCATGGTTGCACGTGGTGCTCTGATTAAACCTTGGATATTTACCGAAATCAAGGAACAGAGACATTGGGACATCAGTTCTGGTGAGCGACTGAATATTCTCAAAGATTTTGTGCATTTTGGCCTTGAACACTGGGGGTCTGACACAAAAGGAGTGGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACCTGTAGGTACGTACCTGTTGGTCTTTTGGAAGTGATTCCACAACGAATAAACTGGCGTCCCCCTTCTTACTATGGGAGAGATGAACTTGAGACGCTGATGGCCTCAGACTCAGCAGCTGACTGGATACGCATATCAGAGATGTTACTAGGCAAGGTTCCGGATGGCTTTACATTTGCTCCAAAGCACAAATCAAATGCTTACGATAGAGCCGAAAATGGCTGA 1926 0.4486 MEAELPGHEAAAVEVTAQQLVARAIAPIKKEFLRPPPLRSSSAAPNDNKKNPAHSGSGLLKDNKSKRQLKRERREEQKSARNLCPELAKTGDVTSCPYNDKCRFSHDIEAFKAQKPADLDGQCPFLKSGGPCPYGLACRFSSTHEDAVPSSTGHLNGLMSSSEVNGLTKDVQKLLWKNKMRFSKADARLKSLGLLGPSKSKMKDLENKEAENGGSNKCGRSDDNGSCEIASDLGPKLEEAIKDDADAKSGSDELCPQKRRKTEVKCDPSETENEDVNVTEEVAEISSINVEPEAGCDAKTIETDLSLKLHPREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGVDVTCGEMAMCTNLLQGQASEWALLRHFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVDVASSTVEKPITIKVRTAYFEGKNRIDSLIADMGSWGASAVTIHGRSRQQRYSKLADWEYIYQCGRKAPKTLQVVGNGDVFSFLDWNNHRTACPELATCMVARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLEVIPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00013 641 ProSitePatterns Uncharacterized protein family UPF0034 signature. 373 391 IPR018517 GO:0008033|GO:0017150|GO:0050660
Stsc241673g00013 641 MobiDBLite consensus disorder prediction 195 224 - -
Stsc241673g00013 641 Pfam Dihydrouridine synthase (Dus) 371 526 IPR035587 -
Stsc241673g00013 641 Gene3D Aldolase class I 317 527 IPR013785 -
Stsc241673g00013 641 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 107 IPR000571 GO:0046872
Stsc241673g00013 641 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 74 154 - -
Stsc241673g00013 641 CDD DUS_like_FMN 322 524 IPR035587 -
Stsc241673g00013 641 ProSiteProfiles Zinc finger C3H1-type profile. 78 109 IPR000571 GO:0046872
Stsc241673g00013 641 MobiDBLite consensus disorder prediction 60 82 - -
Stsc241673g00013 641 SUPERFAMILY FMN-linked oxidoreductases 322 602 - -
Stsc241673g00013 641 Gene3D - 73 152 - -
Stsc241673g00013 641 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 371 635 - -
Stsc241673g00013 641 MobiDBLite consensus disorder prediction 29 83 - -
Stsc241673g00013 641 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00013 Stsc-Chr241673 77732 82035 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc241673g00013 Dus 1e-35 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00013 K05544 - gmx:100783494 993.416