Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241673g00005 ATGCTAGTAGGACAAGCCCCTTCTTCGAATTTGGTCCTCAATTCCAATTACAATTCTAGACAATGGCGCTGGTGGGATTGGTCATCACTCTCTCAAAGGCCTCCGCTGATTTCCCCTTGGCGCACTACACCCTCCATCACCGCCACCGCCTCTTCCTCCTCTCAGCAACAAGACACCCCCACCAGCATAACAACAAGTACCGATTCGTCCTCATCCTCAATAAGCTCGAGTTTCGGAAGACTGAAAGCTCAGAAAGTCAAAGCTCTAGTCCACAGGTCCAAGCAGCACAGAAGCAGAAGCAATGATGAGGATCGACCACGTGATTCATCTCCAAACCCTCGTTCAAGAGGAGGATGGGGGGACGCTGGAGGATCCTTCCGCTCTCTTAATTCTCAGGAGCCCGCTCCCGACACCAACTTCTTCAGTGTCAAGTCCTTCAAGGAACTAGGCTGCGCTGACTACATCATCCAATCCCTCCAAAAGCTCTCTTTCTCGCGCCCTTCGAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATCATAGCCGACCAAAGCGGTTCTGGAAAGACTTTAGCCTATCTTGCACCAATAATTCAGCGTCTTAGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCAATGTCTAGATCTGGGGTTCCTTTCAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAATTGGAAACTTTACAGCAGGGTGTTGACGTATTAATAGCTACACCTGGCCGTTTTCTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACCAACCTAAGATGTGCTGTGTTGGATGAAGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAATGCTTGATTAATTCATCACCTGTAGCTACACAATACTTATTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAACTTTTCCCCGATTGTGAGATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGACTGCAGTGGAGAAGATGGGCAAGAAAAAACTCCTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCTGCTTGCAGAGGAACGCCCTGTTCCAAGAACTATTGTGTTCTGCAACAAAATTGATACGTGCCGAAAAGTCGAAAATGCATTGAAGCGCATAGATAGAAAGGGAGCACTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCAAGGCTTGCTAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAATGTCCCAGTTTATGGTTTGCACTGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTCGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGTGCCAAGGGAGTGGGGAAGGCATTCATATTCGTGGTGGGGAAGCAAGTATCACTTGCGCGCAAAATCATGGAAAGAAATCGAAAAGGTCACCCGCTACATGATGTCCCTTCTGCTGCTACCTTCTAA 1650 0.4685 MLVGQAPSSNLVLNSNYNSRQWRWWDWSSLSQRPPLISPWRTTPSITATASSSSQQQDTPTSITTSTDSSSSSISSSFGRLKAQKVKALVHRSKQHRSRSNDEDRPRDSSPNPRSRGGWGDAGGSFRSLNSQEPAPDTNFFSVKSFKELGCADYIIQSLQKLSFSRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVLDNCRSMSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVATQYLFVTATLPRDVYSKLVELFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTPDTAFLNKKSALLLLAEERPVPRTIVFCNKIDTCRKVENALKRIDRKGALIQVLPFHAAMTQESRLASMKEFARSPSKQMSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAATF 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241673g00005 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Stsc241673g00005 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 520 IPR027417 -
Stsc241673g00005 549 CDD DEADc 155 350 - -
Stsc241673g00005 549 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 52 545 - -
Stsc241673g00005 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 356 IPR014001 -
Stsc241673g00005 549 Gene3D - 369 542 IPR027417 -
Stsc241673g00005 549 CDD SF2_C_DEAD 368 519 - -
Stsc241673g00005 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 549 IPR001650 -
Stsc241673g00005 549 SMART ultradead3 163 371 IPR014001 -
Stsc241673g00005 549 MobiDBLite consensus disorder prediction 95 111 - -
Stsc241673g00005 549 Gene3D - 126 356 IPR027417 -
Stsc241673g00005 549 SMART helicmild6 419 509 IPR001650 -
Stsc241673g00005 549 Pfam DEAD/DEAH box helicase 169 342 IPR011545 GO:0003676|GO:0005524
Stsc241673g00005 549 MobiDBLite consensus disorder prediction 41 80 - -
Stsc241673g00005 549 MobiDBLite consensus disorder prediction 41 134 - -
Stsc241673g00005 549 Pfam Helicase conserved C-terminal domain 397 508 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241673g00005 Stsc-Chr241673 34828 38678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241673g00005 144 517 Eukaryotic Initiation Factors Gene Family AT3G13920 28.232 4.27e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241673g00005 K13179 - gmx:100780849 727.243