Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241672g00023 ATGGCTGTTATAACAACAACAAGGAGGACTCAACATTTCGGTCGTACAACAACACCAACATGCAAGTACTGGCTAGCTGGGAGATGCAACAGAAATCCTTGCAGATTTTCACATACCTTACCAACATCTCCATCCAATATATACTATAATCCCTACACCACTTATAACCATTCCAAGAAGCCAACAACATGCACACCAAAGCCCCTCCAGAAGCCACCAAATCATGCACCAAAGGCTCTTGTGTCTGTTGAGAAGCCAATCAATTGCAGAGGAGAGGCTATGTCTGTTGAGAAGGTTATTGAGTGTGGACCAAAGGCTATGTCTGTTGAGAAGGCAACCAAGTGTGAACAAAAGCCTTTATTGATTGAAAAGACTATAGATGTGGAAGATGCGGCCACTGTCGCTAAAGCTTCTGTGGAGAAATCGCGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTGCATGGTGACCTGTGTCCGGATTTGCATTCATGGTTTTATGGTGATGGATTTTCTCCACTTGCAAAGCTTCATGAACATAACAAGGTTGTCACTGGGAATGCTCTGTCTACTGGTTCAGACAAACTTTATTCTGGTAGCATTGATGGCACAGTTCGGGCGTGGGACTGCAACACTAGCCGTTGTGTTAATTCAATAAATCTTGGCTCTGAAATCACCTCTTTGATATCTGAGGGCCATTGGGTTTTTGCTGGTTTGAAGAATTCTGTAAAGGCATGGAACATTCAGACTGGTGCTGATGTTACTCTTGATGGACTCAAGGGGCAAGTTCTTTCCCTGAATTTCGGCAATGATATCCTCTTTGCCGGAAGAGAGGATGGTGTTATTTATGCTTGGAGAGGCAACTCTGATCCCAAAGCTGAGTCTGCTTTCGAACTGGTTGTAACACTAAGTGGTCATACTAAATCAGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGCTCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTAGAGTGCACGATGACACTTAACAGGCATACCGACACAGTCACATCGCTTATTTGTTGGGAAGATTATTTGTTATCGAGTTCATCTGATTGCACAGTCAATGTCTGGGTGTGCACAGAGGAGGGAACTCTGAAAGTCACATACACTCACACTGAAGAAAATGGGGTTCTTGGACTATATGGGATGACTGATGCAGAAGCCAAGCCAATATTATTCTGCTCATGCAAAGACAATTCAATTCGTATGTATGAATTGCCGATGTTTTTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTCGAGATAGGCCCTGGCGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTATGGAAATGGTTGGAAGAGCCTAAGGTTGTACTCATTGTTAATGCTTTGGGACGCTGGTAG 1440 0.4333 MAVITTTRRTQHFGRTTTPTCKYWLAGRCNRNPCRFSHTLPTSPSNIYYNPYTTYNHSKKPTTCTPKPLQKPPNHAPKALVSVEKPINCRGEAMSVEKVIECGPKAMSVEKATKCEQKPLLIEKTIDVEDAATVAKASVEKSRSICKYWMTDNCVHGDLCPDLHSWFYGDGFSPLAKLHEHNKVVTGNALSTGSDKLYSGSIDGTVRAWDCNTSRCVNSINLGSEITSLISEGHWVFAGLKNSVKAWNIQTGADVTLDGLKGQVLSLNFGNDILFAGREDGVIYAWRGNSDPKAESAFELVVTLSGHTKSVVCLAIGCYKMLYSGSMDHSIKVWDLDTLECTMTLNRHTDTVTSLICWEDYLLSSSSDCTVNVWVCTEEGTLKVTYTHTEENGVLGLYGMTDAEAKPILFCSCKDNSIRMYELPMFLERGRLFTRQEVRSFEIGPGGLFFTGDGTGLLNVWKWLEEPKVVLIVNALGRW 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241672g00023 479 Gene3D - 5 77 - -
Stsc241672g00023 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Stsc241672g00023 479 Gene3D - 162 293 IPR015943 GO:0005515
Stsc241672g00023 479 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Stsc241672g00023 479 SMART WD40_4 338 375 IPR001680 GO:0005515
Stsc241672g00023 479 SMART WD40_4 171 210 IPR001680 GO:0005515
Stsc241672g00023 479 SMART WD40_4 297 335 IPR001680 GO:0005515
Stsc241672g00023 479 SMART WD40_4 250 287 IPR001680 GO:0005515
Stsc241672g00023 479 SMART WD40_4 379 422 IPR001680 GO:0005515
Stsc241672g00023 479 SMART WD40_4 428 462 IPR001680 GO:0005515
Stsc241672g00023 479 Pfam WD domain, G-beta repeat 340 374 IPR001680 GO:0005515
Stsc241672g00023 479 Pfam WD domain, G-beta repeat 173 210 IPR001680 GO:0005515
Stsc241672g00023 479 Pfam WD domain, G-beta repeat 300 335 IPR001680 GO:0005515
Stsc241672g00023 479 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Stsc241672g00023 479 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Stsc241672g00023 479 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Stsc241672g00023 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 374 IPR001680 GO:0005515
Stsc241672g00023 479 PANTHER - 16 470 IPR044715 -
Stsc241672g00023 479 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Stsc241672g00023 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 344 IPR001680 GO:0005515
Stsc241672g00023 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 210 - -
Stsc241672g00023 479 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Stsc241672g00023 479 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Stsc241672g00023 479 SUPERFAMILY WD40 repeat-like 172 469 IPR036322 GO:0005515
Stsc241672g00023 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 338 - -
Stsc241672g00023 479 Gene3D - 294 474 IPR015943 GO:0005515
Stsc241672g00023 479 SMART c3hfinal6 141 166 IPR000571 GO:0046872
Stsc241672g00023 479 SMART c3hfinal6 15 40 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241672g00023 Stsc-Chr241672 152709 157933 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241672g00023 236 409 Acyl Lipid Metabolism Gene Families AT2G31830 25.490 1.08e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc241672g00023 WD40 0.085 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241672g00023 - - aip:107624831 728.013