Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241672g00007 ATGGAACATTCATCATTTCAGTCAGAAGTTCCATCATCATCATTATTTCAATCAGAAGCAGCAGCACCACAAGCAAGGGAGGGGATACATGAAATAGGGCCACCACCATTCTTAACCAAAACCTTTGATGTGATGGATGATCCAACAACCAACCATGTTGTTTCTTGTAGCAGAGGAGGTACCAGCTTTGTTGTTTGGGATCTACAAACCTTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAACAACTTCTCAAGCTTTGTAAGGCAACTCAATACTTATGGCTTTAGGAAAATTGATCCAGAAAAATGGGAATTTGCAAATGAAGGATTCATCAAAGGTCACAAGCATCTCTTGAAGACCATTAGGAGAAGGAAACCACCTTCACACCAACCAATTATTCCTTCCCAACTAGGCCATGATTATGGTGATCACTCCCTCGAGCTCGGCCAATTCAGCCTATACAGAGAGATCGACCGGTTGCGGCACGTCAACCAGAGGGTAAGGTCAATTGAGCAAGGAGAATCAAGCAATATTAATAGTACTCGTGTTAATAAAGTTGAGCCTTTGGAATTTGGTGTTTCAGAGTTGGAAGTGTTGGCTATGGAAATGCAAGGTTTTGGTAGAGGGAATAGAGGGAATTTGGAACATGAAGAGAGGCTTGAAAGGGAAATCGATGAAGGCTTTTGGGAGGAGCTTATGCTTAATGAGAAATTTGAAGGAAAATGA 732 0.418 MEHSSFQSEVPSSSLFQSEAAAPQAREGIHEIGPPPFLTKTFDVMDDPTTNHVVSCSRGGTSFVVWDLQTFSKTLLPKYFKHNNFSSFVRQLNTYGFRKIDPEKWEFANEGFIKGHKHLLKTIRRRKPPSHQPIIPSQLGHDYGDHSLELGQFSLYREIDRLRHVNQRVRSIEQGESSNINSTRVNKVEPLEFGVSELEVLAMEMQGFGRGNRGNLEHEERLEREIDEGFWEELMLNEKFEGK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241672g00007 243 FunFam Heat shock transcription factor 1 30 127 - -
Stsc241672g00007 243 Gene3D - 30 127 IPR036388 -
Stsc241672g00007 243 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241672g00007 243 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241672g00007 243 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241672g00007 243 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241672g00007 243 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241672g00007 243 SUPERFAMILY "Winged helix" DNA-binding domain 33 126 IPR036390 -
Stsc241672g00007 243 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 169 IPR027725 -
Stsc241672g00007 243 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241672g00007 Stsc-Chr241672 35130 37158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241672g00007 27 240 HSF AT3G51910 45.525 7.89e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc241672g00007 HSF_DNA-bind 3.3e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241672g00007 K09419 - gmx:100811945 229.18