Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241671g00036 ATGTATCAGAACCAGGCCTTTCCTTCAGGATCCTATGAAGAAATGTTATCTGGGAATTCCCTATTAACTCATCATAACTATGGTGATTCGGTCGGAGGAGGAGGAGGACACAACAATGAGCTTAAGTTCATGACCTCTCTAGGTGAAGCAGTGACTATGCAGCAGCCTATGGGAGAGCATTCCAATGCTGCTGCGACCCGCGGCGATCCGTCTTGCAACTCTTTTGCTGGAGATCAAAACATGCAGTGTCAAGGTTTGTCGCTTAGCCTCGGATCGGTTATGCCTTCTATTGCAACATCAATGCCTCATCACTTTCAATACCCTCAGTATCACAACTCTAGCTTCACTTCACTGATGAATGCCATGCCAAGCTTAAAGGCAAATAATGGATCATCTCTTAAAGATGATGAGGTGAGAAACACCGAATGCATGACACCACCGATGTCTTCTGGAGGATTCTATAACTCTATAAAGAGGGAAGGTTTGTATAACAATGCTAATCACCCTTCAATGTGCCTCGGCGAAGGCCAGGTCGATCCGAGCCTACATGGATCGGCTGGTTTTTCCTCTAGTACTGCCTTGAACTCACAGTACCTTAAGGCAGCACAGGAGTTGCTTGACGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAATCCAGATTGGAAAAACAACAGAGTTTTCGCGAAGCCGGATTAGATGGCTCGAAAGATTCTGATGGAAAATCTAACAGTCAATCTGTGCAAGTATCTTCAGGTGCCAATGGTTCTGCTGTGAACTCTACAACCGAGCTATCGCCGGCAGATCGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGGCCATGTTAGATGAGGTAGATAAAAGATACAGACAATATTGCCATCAGATGCAGATTGTGGTATCATCATTTGATATGGTTGCCGGGTGTGGAGCTGCTGAGCCGTACACTGCGCTTGCATTGCGCACGATTTCGCGCCACTTTCGATGTTTGCGCGACGCCATCAGTGGCCAGATTCAAGTGACTCAGAGGAGCCTTGGAGAGCAAGAGGGGATACCTCGGCTCCGCTATGTCGATCAGCAACTAAGACAACAAAAGGCACTCCAGCAACTTGGTGTGATGAGACAAGCTTGGAGACCTCAGAGAGGACTTCCAGAGAGCTCTGTTTCAATACTCCGTGCATGGCTATTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAGATTATGCTGGCAAGGCAAACCGGCTTGACCCGAAACCAGGTGGCAAATTGGTTCATAAATGCAAGGGTGCGGCTATGGAAGNNNNNNNNNNAAATGTATAAAGAAGAATTTGGTGATTCTGAGATGAGTTGCAACCTCTTATCCGAAAACAGCATACCAAAAGCTTCAAGAGATGATGTTCAAGTTTCTGATAATAACAAAGGAGAAGAGTCACAAGAAAATTTGGTAGCTGTTGATGATAGTGTTCAACATGGTATCCAAAGTAGTGATTATGGTGAAAACCTCATGGATTCTTCTTCTTCAAGGACTAGTAGGAAATTGCAACAATGTGATCAAAGATTTAACATGAAAAACACATCTTTTTCAAATGCTTCTACAATACAAATCAATGGTCATGATGATGGTAATGGTTGCTTAACGGCTTCAACTCATGCAACATATGATTATTCCGCGTTGGGAAACTTTGCGGCTGTCGGCAGCCAAGTGTCCCTTGCGCTCGAGTTGAGGAACCGCGAGAGCAACGCATTAGGCATGTCAAATGGTGATGAGATACACAACAAAAGGAGTAGTAACCAGACTTTGGCTTCTTCATCTGAGAATGATTTGTTGGATTATCATTTGACAGAACAAGAGAAGCAGCAGCAGCAACAACAACAACACAAGTTTGGGAATCCACAACAACGGTTGTTACATGAGTTTGTTGTTTGA 1938 0.4401 MYQNQAFPSGSYEEMLSGNSLLTHHNYGDSVGGGGGHNNELKFMTSLGEAVTMQQPMGEHSNAAATRGDPSCNSFAGDQNMQCQGLSLSLGSVMPSIATSMPHHFQYPQYHNSSFTSLMNAMPSLKANNGSSLKDDEVRNTECMTPPMSSGGFYNSIKREGLYNNANHPSMCLGEGQVDPSLHGSAGFSSSTALNSQYLKAAQELLDEIVNVRKALKQSRLEKQQSFREAGLDGSKDSDGKSNSQSVQVSSGANGSAVNSTTELSPADRQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKXXXXMYKEEFGDSEMSCNLLSENSIPKASRDDVQVSDNNKGEESQENLVAVDDSVQHGIQSSDYGENLMDSSSSRTSRKLQQCDQRFNMKNTSFSNASTIQINGHDDGNGCLTASTHATYDYSALGNFAAVGSQVSLALELRNRESNALGMSNGDEIHNKRSSNQTLASSSENDLLDYHLTEQEKQQQQQQQHKFGNPQQRLLHEFVV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241671g00036 645 Coils Coil 199 222 - -
Stsc241671g00036 645 SMART HOX_1 378 442 IPR001356 GO:0003677
Stsc241671g00036 645 CDD homeodomain 378 437 IPR001356 GO:0003677
Stsc241671g00036 645 MobiDBLite consensus disorder prediction 586 611 - -
Stsc241671g00036 645 Gene3D - 384 440 - -
Stsc241671g00036 645 MobiDBLite consensus disorder prediction 237 268 - -
Stsc241671g00036 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 472 - -
Stsc241671g00036 645 SUPERFAMILY Homeodomain-like 379 443 IPR009057 -
Stsc241671g00036 645 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Stsc241671g00036 645 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Stsc241671g00036 645 Pfam Associated with HOX 194 336 IPR006563 -
Stsc241671g00036 645 MobiDBLite consensus disorder prediction 497 516 - -
Stsc241671g00036 645 MobiDBLite consensus disorder prediction 226 269 - -
Stsc241671g00036 645 SMART prehox3 186 337 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241671g00036 Stsc-Chr241671 258855 263090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241671g00036 186 461 Homeobox Transcription Factor Family AT2G16400 61.111 1.18e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc241671g00036 POX 4.6e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241671g00036 - - gmx:100775682 728.013