Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241671g00016 ATGGAGTCATCAAATGCATCGAAGAAATCAAGACCCGAATCATCACGATCTTCATGCCAACACCTTAAGATTAGAAAGGAGAGATTAGGAGATAGGATTGGGGCTCTTCAGCAATTGGTCGCTCCTTTTGGCAAGACAGATACAGCATCCGTACTTCTCGAGGCAATTGGATACATTAGATTCCTTCAAAGCCAAGTGGAGACACTGAGTGTTCCATATATGAAGTCATTGCGGAACCAAATCAGCAGACCACACATAATCAGGCAAGGGGTTTTAGCAATAGGTGATGATAATAGCAAGAACTCGGAGGCAAAGGATCAAGACCTTAGAAGCCGAGGCCTCTGCCTTGTACCAATGTCTTGCATGGCATACATAGCCGGCAATGATGGTGGCGGTTGTGGAGCGTGGCAGCAACCGCAAAATTTTGGCGGTGCAACCTAA 441 0.4626 MESSNASKKSRPESSRSSCQHLKIRKERLGDRIGALQQLVAPFGKTDTASVLLEAIGYIRFLQSQVETLSVPYMKSLRNQISRPHIIRQGVLAIGDDNSKNSEAKDQDLRSRGLCLVPMSCMAYIAGNDGGGCGAWQQPQNFGGAT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241671g00016 146 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 62 IPR011598 GO:0046983
Stsc241671g00016 146 CDD bHLH_AtbHLH_like 25 70 IPR045239 -
Stsc241671g00016 146 Gene3D - 20 89 IPR036638 GO:0046983
Stsc241671g00016 146 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241671g00016 146 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 123 - -
Stsc241671g00016 146 FunFam Transcription factor bHLH123 family 23 85 - -
Stsc241671g00016 146 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 74 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241671g00016 Stsc-Chr241671 114765 118269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241671g00016 5 146 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 60.544 4.32e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241671g00016 - - adu:107493079 239.965