Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241670g00020 ATGGCACCAGTTTCATTGCCCCCAGGTTTCAGGTTCCACCCAACAGATGAAGAACTTGTTGCTTATTACCTCAAAAGGAAGATCAATGGCCGCAAGATTGAGTTGGAGATCATTGCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTATTACCTGGGAAGGATTTGGAGTGGTATTTCTTTAGCCCACGAGATAGGAAGTATCCGAACGGGTCAAGAACGAACCGTGCAACAAAATCTGGGTATTGGAAGGCAACAGGGAAGGACCGTAAAGTAAATTCACAATCACGTTCTGTTGGTATGAAGAAAACCCTTGTTTACTATCGTGGAAGAGCTCCTCATGGCTCTCGCACTGACTGGGTTATGCATGAATATCGTCTTGATGATGCTGAATGTGAAAATGCTTCTTCAGGCTTGCAGGATGCATATGCACTTTGCCGTGTGTTCAAGAAGAGTGCAGTGATAACCCCTAAAGTTGATGATGAGGAACACCATCATCATCATCATGTGAATGCTAATAATAATAGCAGCCATGCTTTGCCAATTACAAGCGATCAATCATCAAGTATGGAGTTATACTCTGAAGGAAGGGGTGAAGATTTGGATAATAGCTCTAATTATTATGTTCCCATTGATACAACTTCCACATTACCCCTCAACAACATGGTGATGAACAATAATAACAGTGATGCTTCGTCTTTCAATAGTAGGGATCATGGGAAATGGTCACAATTTGTTTCACAAGATCCATTGTTCACCTTTCCAACTTCCTCAGTTGCTAATAATTATGGATCTATATCATACCCCCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTCACCATGCCTCCATTGGAGGTAGAGGACTTCCCTCATGTTGGAACCTCCGAGCTGAAAATGACACAATTACCCTCGGGTGCTGCCGCCGCCGCGCACAGAACTCGAAACGAAACAGATATCTTGCAGGAAATTCTTTCCGTTGCTCATGCTTCTCAGGAGTTGATAAACCACTCCAGCTACTCATCATCATCATGGGGTGGTGGTGGCGGCGGCAACCACGAAAATAGTACAAGTTATCGTGGAGATGATGATTTCACTTTCATGGTTGGTAGCACCAACAACAATAATTTGAACGACATTAACTCCATGAGATATGTTGATAGAAACTGGGAAGACCCAAACAACACTACAAGATCCATAGATATTGGATATTTGGATGAAGAATTTAAGGGAGAGAGGATGGTAGAGAATTTAAGATGGATTGGAATGTCATCAAAAGATTTAGAAAAGAACTTCACGGAAGAGCAAAAGATTGTTCCAATAGAGGATATATCAAGCTTCCAGACAAATAATAGAGAAGAAAATGAGGTGCAAGAAGAATCTGAGCAATACAATTGCAACAAGGAACTAATGAGGAATGGCACTGTCATCAATGATTTCTCATTAGGGTTCATCAATGATGATGACGACGACCCGAACCCTAATAACAACAGCGATGAGAATTTTCTAGAAGATGGTCATAACAACATAGATAATGATGATTACTCAAGTTCTCCAAGCTTTGAGGTTGTTGAGGAAATAAGGGTCAGCCATGGATCAATGTTTGTTTCAACTCGCCGCGTCGCCCACACCTTCTTCCACCAAATAGTTCCTTCACAAACCGTCCAAGTTCACCTCAATCCAGTGATAACAAGCAATAATGAAGAGACAATGATGATGACAATGGAGAGGAATGATAATCAAGGGTATTTTAATATGATGGGGAAGCTAATAATGAAGCCTTCAAAGATAATAGCAACTGCAATTGTGTTCGTATTTTCACTTCTATTCATGCATTGTGCTTATTTCAAGGAAGAAGTGGAAATGACGAAGAAGAGAAACAGATCACAATCATCAAAGATGATCAAATGGAACAACAACAATAAGTGTTTGAGGGCTACGGTGAAGAGATTCATCGCCGTCACATGCAGCTTTAACGCAGTCAGTGAAACTCGAGCTGCCATTGTCATTGAGATGGATCCCTTCATCACTCTTGTGTATCATCACATGGGTAGGTTTGAGAGAGGTCTGAACGGTGTAGTTATATATAATGGGGGTGTGTCTAGTACCAAAGCTGTTTACTGGTTAGTGCTAGGGTTAGGGTTAGGTGATGGGCTGAGGTTGCTTGAGACGGATGAGGAGGTTGAAAACATGTGTGATGCTGTTGTCGACAATGGAAATAGAGTGCATTTGTACTTGGAGCACCCTGTTATTGTTGACCCCATTTTGATTGAGCCAGTGGTTGTTTTTGATGACACACATGAAGCTGATGCAGAAGTTCTAGAAGGAGATTAA 2370 0.4173 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIAEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRSVGMKKTLVYYRGRAPHGSRTDWVMHEYRLDDAECENASSGLQDAYALCRVFKKSAVITPKVDDEEHHHHHHVNANNNSSHALPITSDQSSSMELYSEGRGEDLDNSSNYYVPIDTTSTLPLNNMVMNNNNSDASSFNSRDHGKWSQFVSQDPLFTFPTSSVANNYGSISYPPSKVDIALECARMQHRFTMPPLEVEDFPHVGTSELKMTQLPSGAAAAAHRTRNETDILQEILSVAHASQELINHSSYSSSSWGGGGGGNHENSTSYRGDDDFTFMVGSTNNNNLNDINSMRYVDRNWEDPNNTTRSIDIGYLDEEFKGERMVENLRWIGMSSKDLEKNFTEEQKIVPIEDISSFQTNNREENEVQEESEQYNCNKELMRNGTVINDFSLGFINDDDDDPNPNNNSDENFLEDGHNNIDNDDYSSSPSFEVVEEIRVSHGSMFVSTRRVAHTFFHQIVPSQTVQVHLNPVITSNNEETMMMTMERNDNQGYFNMMGKLIMKPSKIIATAIVFVFSLLFMHCAYFKEEVEMTKKRNRSQSSKMIKWNNNNKCLRATVKRFIAVTCSFNAVSETRAAIVIEMDPFITLVYHHMGRFERGLNGVVIYNGGVSSTKAVYWLVLGLGLGDGLRLLETDEEVENMCDAVVDNGNRVHLYLEHPVIVDPILIEPVVVFDDTHEADAEVLEGD 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241670g00020 789 MobiDBLite consensus disorder prediction 351 371 - -
Stsc241670g00020 789 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc241670g00020 789 MobiDBLite consensus disorder prediction 167 205 - -
Stsc241670g00020 789 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Stsc241670g00020 789 MobiDBLite consensus disorder prediction 351 368 - -
Stsc241670g00020 789 Coils Coil 462 482 - -
Stsc241670g00020 789 MobiDBLite consensus disorder prediction 179 199 - -
Stsc241670g00020 789 MobiDBLite consensus disorder prediction 496 529 - -
Stsc241670g00020 789 FunFam Nac domain-containing protein 86 15 160 - -
Stsc241670g00020 789 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Stsc241670g00020 789 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Stsc241670g00020 789 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241670g00020 Stsc-Chr241670 161875 169218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241670g00020 1 627 NAC Transcription Factor Family AT1G65910 47.806 2.01e-168 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241670g00020 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241670g00020 - - gmx:100792628 740.725