Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241670g00011 ATGATGATACAATATCAGTTGCATAGTGTGATTTCAATAGCAATAATTGTTGTTGTTGTTACACAGATAAATGTGGGAGTGAATTCAGCTTCAGAAGGTGATAAGGTAACCAATTTGCCAGGGCAGCCAGCAGTGAAGTTCCAGCAATATGCTGGTTACATTACTGTGGATGAGAAGCAACAAAGATCTTTGTTTTACTACTTTGTTGAAGCAGAACTTCAACCTGCTTCCAAGCCATTGGTTCTATGGCTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCCGGAGCTTTCGTCGAGCACGGTCCGTTTAAACCAAGTGAAAATGTTCTTCTCAAGAATGATTATAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCATACTCTGCCAATAAATCTTTCTATGACTACGTTGATGATGAAATGACAGCAAGGGATAACCTTGTTTTCTTACAGAATTGGTTCACTAAATTCCCAGAGTACAAAAACAATGACTTCTTTATCACAGGGGAGAGTTATGCAGGTCACTATGTGCCACAACTTGCACAACTCATTGTTGAAACCAAGACAAAGTTCAATTTCAAGGGTATAGCAATAGGAAACCCTCTTCTGGAATTTAACACAGATTTCAATTCAAGGGCAGAGTATTATTGGTCCCATGGACTAATATCTGATTCAACTTATGAACTTTTCACTAAAGTCTGCAATTACTCTGAAATTAGGAGACAAAGTCAAAGTGGGAGATTAAATGGGGTTTGTGCAGCTGTGAATAAAATAGTTTCAAGTGAAGTTGGGAGATATGTTGATGCATATGATATCACTCTTGATGTGTGCCTTTCATCAGCAGATCAACAAGCTTATGTGCTCAATCAACTTACCCAAGTGCAAGAGGGTGAGAAGATTGATGTTTGCGTGGAAGATGAAACAATCACATATTTGAATAGAAAAGATGTGCAAAAAGCTCTCCATGCTAAGCTTGAAGGGATCACTACATGGTCAACTTGCAGCAACGTTCTGAAATATGACATGCAGAACCTAGAGGTTCCAACCATTTCTATCCTAGGAAAACTTGTTAAGTCTGGTATTAGAGTTCTAGTATACAGTGGTGATCAAGATTCAGTTCTGCCATTAACTGGAACAAGAATACTTGTGAATGGGTTGGCTAAGGACATAGGACTTAATACAACAGAGTCATATAGAGCATGGTTTGGAGGAAGACAGGTAGCTGGATGGACACAAGTATACGGTGACATGTTATCGTTTGCTACTATAAGAGGAGCATCTCATGAAGCTCCATTTTCACAGCCAGAGAGATCACTGGTGCTGCTAAAAGCATTTGTTGAAGGCAAATCCCTTCCAGTTCCAGGAATAATCTCTCAACCATGA 1413 0.397 MMIQYQLHSVISIAIIVVVVTQINVGVNSASEGDKVTNLPGQPAVKFQQYAGYITVDEKQQRSLFYYFVEAELQPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENVLLKNDYSWNKEANMLYLESPAGVGFSYSANKSFYDYVDDEMTARDNLVFLQNWFTKFPEYKNNDFFITGESYAGHYVPQLAQLIVETKTKFNFKGIAIGNPLLEFNTDFNSRAEYYWSHGLISDSTYELFTKVCNYSEIRRQSQSGRLNGVCAAVNKIVSSEVGRYVDAYDITLDVCLSSADQQAYVLNQLTQVQEGEKIDVCVEDETITYLNRKDVQKALHAKLEGITTWSTCSNVLKYDMQNLEVPTISILGKLVKSGIRVLVYSGDQDSVLPLTGTRILVNGLAKDIGLNTTESYRAWFGGRQVAGWTQVYGDMLSFATIRGASHEAPFSQPERSLVLLKAFVEGKSLPVPGIISQP 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241670g00011 470 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Stsc241670g00011 470 FunFam Carboxypeptidase 359 458 - -
Stsc241670g00011 470 SUPERFAMILY alpha/beta-Hydrolases 27 461 IPR029058 -
Stsc241670g00011 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Stsc241670g00011 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Stsc241670g00011 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Stsc241670g00011 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Stsc241670g00011 470 Gene3D alpha/beta hydrolase 30 289 IPR029058 -
Stsc241670g00011 470 ProSitePatterns Serine carboxypeptidases, histidine active site. 428 445 IPR033124 GO:0004185
Stsc241670g00011 470 Pfam Serine carboxypeptidase 41 458 IPR001563 GO:0004185|GO:0006508
Stsc241670g00011 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 445 IPR001563 GO:0004185|GO:0006508
Stsc241670g00011 470 FunFam Carboxypeptidase 29 462 - -
Stsc241670g00011 470 Gene3D - 360 458 - -
Stsc241670g00011 470 Gene3D - 313 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241670g00011 Stsc-Chr241670 83229 90083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241670g00011 321 461 Calmodulin-binding Proteins AT2G22960 27.660 7.49e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241670g00011 K16297 - gmx:100805028 794.267