Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241669g00001 ATGGTGGTCAATATTACTATTAGCTTTGCGCTAGAAAACTTGGCGCGGTTGCTTGTTAGTGAGGTGGCATTGCTTTCGAGCGTGAAGGATCAAATCAGGTCCCTAAGTGATGAATTGAAGTTCATGAACATTTTCATCAAGAGTTCGGAGGGAAAGCATGACAATGAGTTTGTGAGAGAAGTGGTGAACCAGATCAGAGATGTGGCGTACCAAATTGAAGATGTAGTAGACACCTATGTTGTCAATGTCAACATGCAAAGAAGCAGAAACATGTTGGCAAAGTGGTTTCACAACAAAGACCATGTGCTGATGCTCCATGAGGTGAATGATCGGATTAACACCATCAAGTGCAGGATCAATGAGATCTATCAGAACAAGTCCAAATATGACATCCAGCCATGTGATTTTGAAATTGAAAGTATTGCTAGAAACAAAGAATTTCAAAAAGAGGCATTGTTTATGAGAAGGAAGGATGTGGAAGAAAAAGAAGTGGTAGGGTTGGTGCATGAATCCAATTTGATTATTGAGAAACTCAAGACAGATTCTTCTAGTCTTAATGTGGTTGCCATAATAGGCATGGGTGGGTTGGGTAAGACCACCCTTGCTAGGAAGATATACAACAAAGATGAGGTGAAGCGCATGTTTGATTGTTGTGCATGGAGTTGTGTGCCCGATACTTATGTAACTAGAGATCTACTTTTGAGTTTTTTTAACTGTTTGAATTTATCATTGGATGAATGTAAAGATTTGAGTTTGGAGGAACTAAAGCAGAATATAAGTAAACGGTTGAAGGGGAAGAAGTATTTGGTAGTGCTTGATGACATATGGAAAACTCAAGTATGGGATTTGTTGAAAGAGGTATTTCCAAAAGAGAGAAATGGGAGTAGTATAATCATAACGAGTCGTCTGAAAGAGGTGGCATTATATAGCAAAGCAACCCTTGTTTGTGAACTTCCCTTTCTGAATGAAGCAGTTAGTTGGGAACTCTTTTCCAAGAAGATCTTCGGACATAAAGAGTGCCCATGTGATCTAGAGCCTCTCGGTAGAACAATGGCTAACAATTGTAAGGGGTTACCACTTGTCATCGTAGTGTTAGCTGGACTTGTTGGAAAAAAAGAGCAGTCAGAAAGAGAATGGCGTAGAATCAAGGATTATGCGAATTGGCATCTGGCTCAAGACATCATGGTCAAAAATATACTAAAACTTAGCTATGATGACTTGCCTCATCAGCTGAGGCCTTGCTTTCTATATCTGGGGATGTATCCTGAAGATTATGAGATACGAGCAAGAGAATTGCTCCAACTGTGGGTAGCTGAAGGGTTCATTTATACAAAAGAAGCTGGAAGAATGAATTCACCAAAAGTAGAAGATATTGCTGACATGTATTTAGATAAGCTTGTAGAACGGGGCTTGGTGCAAGTGGCAAGTAAGAGGAGTGATGGGGGTGTGAAAACATGTAGAGTTCATGATCTTCTTCGTGACCTGTGCATTTCAGAGAGCAAAGCAAACAAGTTTATGGAAGTATGCACCGAGTTGGATGTAAATAACTGCAATTCCCGTAGGATGTCTCTCCAATGTAAAGAAACACTTTGGCCAACCAAAGATAACCAATCACATGCGCGCTCTCTACTCTATTTTGGTGAAGCGACTCGTTGGGATAGTGAATCACAAGGGTGGAAACAGATAATGAATGGCTTCAAGTTGGCTCGTGTGTTGGACATGAACAAAGTAGTGCTATGTTCAACTTCATCACCTAGTGGACTGAAGACATTGATCCATCTAAGATATTTGAGAATGACAATTCGTGACTCAAGACTTATGAATAATATTTTAGATTCTATATGCAATCTTCGGAATCTAGAAACGCTGCATTTAATGTTTGCGGTTGGAATTTTCTCTGAATCTGTTTCTCTACCAAACAAAATATGGAAGCTCAAGTCACTTAGACATGTTCATTTGAATTATTACATAAAAAATTGGACTTGGGGAGCCTCACTGTGGAGAGCGAAAAGTGGGGAAATAAGGATGGAGAACCTCCAGACTCTGGGTTGCATTAATCATGATGTACAAACAGCAAGCATTCTAAACAATGACATGTTCCCCAACTTGACCAAGTTAACTTTATGTGGAACAAAGGAATGGCGGGAAGAGAGAGAATCATTAAGCAAGATTTTACAGAGCCTAAACAAACTTCATAAGTTAAAGCTAATTAACATCATTATTCCATTAGATCCTAATGTGTTTGCAACAAGTCTCACCAAGATTACCTTGTATTCTTCCCTGGATTCAAGGTTGATCAAGACTCTTGGACGACTTCCCAACCTGAAAATCTTGAAAATACTTCGTGGAAAGATACATGGCAATGTTGAGTGCATAGCAGGGGACTTCCCACAGCTTCAAGTGCTACATGTGAATTGGGAAGACGTTAAGATGGATCCTCTTGCAAAGTGGATAATAGAGGAAGGATCAATGCCTCTCATTCGACATTGCAACATCCCTGAGACCTCGAGGTCCTGCACAGCCACCATGACAGAGAGTGAGGTGACATTCATCATCAACACTCAAGCAATGAATGATGCAATAGTTGCAGACTTGTAA 2598 0.4007 MVVNITISFALENLARLLVSEVALLSSVKDQIRSLSDELKFMNIFIKSSEGKHDNEFVREVVNQIRDVAYQIEDVVDTYVVNVNMQRSRNMLAKWFHNKDHVLMLHEVNDRINTIKCRINEIYQNKSKYDIQPCDFEIESIARNKEFQKEALFMRRKDVEEKEVVGLVHESNLIIEKLKTDSSSLNVVAIIGMGGLGKTTLARKIYNKDEVKRMFDCCAWSCVPDTYVTRDLLLSFFNCLNLSLDECKDLSLEELKQNISKRLKGKKYLVVLDDIWKTQVWDLLKEVFPKERNGSSIIITSRLKEVALYSKATLVCELPFLNEAVSWELFSKKIFGHKECPCDLEPLGRTMANNCKGLPLVIVVLAGLVGKKEQSEREWRRIKDYANWHLAQDIMVKNILKLSYDDLPHQLRPCFLYLGMYPEDYEIRARELLQLWVAEGFIYTKEAGRMNSPKVEDIADMYLDKLVERGLVQVASKRSDGGVKTCRVHDLLRDLCISESKANKFMEVCTELDVNNCNSRRMSLQCKETLWPTKDNQSHARSLLYFGEATRWDSESQGWKQIMNGFKLARVLDMNKVVLCSTSSPSGLKTLIHLRYLRMTIRDSRLMNNILDSICNLRNLETLHLMFAVGIFSESVSLPNKIWKLKSLRHVHLNYYIKNWTWGASLWRAKSGEIRMENLQTLGCINHDVQTASILNNDMFPNLTKLTLCGTKEWREERESLSKILQSLNKLHKLKLINIIIPLDPNVFATSLTKITLYSSLDSRLIKTLGRLPNLKILKILRGKIHGNVECIAGDFPQLQVLHVNWEDVKMDPLAKWIIEEGSMPLIRHCNIPETSRSCTATMTESEVTFIINTQAMNDAIVADL 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241669g00001 865 PRINTS Disease resistance protein signature 187 202 - -
Stsc241669g00001 865 PRINTS Disease resistance protein signature 355 369 - -
Stsc241669g00001 865 PRINTS Disease resistance protein signature 262 276 - -
Stsc241669g00001 865 Pfam NB-ARC domain 173 394 IPR002182 GO:0043531
Stsc241669g00001 865 FunFam Probable disease resistance protein At1g63360 404 498 - -
Stsc241669g00001 865 SUPERFAMILY RNI-like 562 836 - -
Stsc241669g00001 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 418 IPR027417 -
Stsc241669g00001 865 PANTHER DISEASE RESISTANCE PROTEIN RP 33 811 IPR044974 GO:0006952
Stsc241669g00001 865 CDD RX-CC_like 7 122 IPR038005 -
Stsc241669g00001 865 Gene3D - 320 403 IPR042197 -
Stsc241669g00001 865 Coils Coil 711 731 - -
Stsc241669g00001 865 Gene3D - 144 313 IPR027417 -
Stsc241669g00001 865 Gene3D Ribonuclease Inhibitor 509 845 IPR032675 -
Stsc241669g00001 865 FunFam Probable disease resistance protein At1g61300 147 313 - -
Stsc241669g00001 865 Gene3D - 6 120 - -
Stsc241669g00001 865 Gene3D - 404 500 IPR036388 -
Stsc241669g00001 865 Pfam Rx N-terminal domain 7 89 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241669g00001 Stsc-Chr241669 25184 28050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241669g00001 188 495 WRKY Transcription Factor Family AT5G45050 26.168 2.83e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241669g00001 - - aip:107635641 946.421