Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241668g00024 ATGTCCTCATCGGATTTTATACTCATGGAACCAGCTGAAGTTGTAGGTGTTAGTGGTGGAAAGTGGACTGATCAGGAAACCCTCTTGCTTCTTGAAGCACTAGAATTGTATAAAGAAAATTGGAATGAAATTGCAGAGCACGTTGGCACAAAATCAAAAGCTCAATGCATTTTGCACTTTGTTCAAATGCCTATTCAGGATGCCTTTATGGACTGTAATGATGACATTGAAACCAGTAGTAAAGAAACAGCAGATCCAGCTGCAAGTAACAATGATGCATCTGCAAATAAGGATGCTTCTGAATGTAATGAGAATAATAGTAGTGATAACATGGAAGGCCATGGCGAAGCTTCCAAGTCTGAAGACGCTAAGGCAAAAGTAGATCAGGAGATTCCAAAACAAGAGGATGTTTCAGGTGAGAAAACCCCTGAGGGAACTTCTAAATCAGAAGATGCCGATAAAGTCAAAGTTAGTCTGGAAGAAGAGAATGACTGTGCTCTAATTGCTCTCAAGGAAGCATTTGCAGCTGTTGGTTATTCTCTTGGACCTGAAGGCCCATCTTCATTTGCTGAAGTTGGTAATCCTGTCATGGCATTGGCAGCTTTCCTAGCGCGCCTGGTGGGTTCTGATGTGGCTTTTGCTTCAGCTCATACCTCCTTTAAATCCATTTCTGCAAATTCTCCTGGCACTGAGCTTGCTGCAAGGAATTCTTTTATTCTGGGAGGTCAACCAGATAATAAGGAACCGACTACAAGGGATTCTAAAAACGAGGACGGCCAAGATATGATAAATGCAAAGCAGGATAAACCAATGTCAGAGGACAAAGATTTACCAAATGATCACAACATGGAAACTGAAGATAATGTTCCAGAGGATAAGAAACAGCTAGCTTCTGAAAATGGAGAATCGGAAAAATTAAATGTTTCAAAGGAGCAATCTATTCTCAACCATGAGGAGGGTAGGCTTGACAATGGTAATGGTTCCAGCAATTCAAAATTACCCAATGATCAAGCTCCATCCACTCTGCATGATTCAGGTGGTTCAACATCCAAGGCTGAAAATCCACCTAGTTCTGAGGAGCAACAAGAGGGAAGTTTGAGCAAAGAACTGTCCAATTCAGAAGAGGGAACAAAGGACATGCCTGCTTCTGACTTGTGTTTGTCAGACAAGAATGGTGTTCAGCAGTCAGTTAAAGCTAATCTTACAGGAAACCATCCAGAACCAGTAGAGAAAACAAAAAATACTGATGTCATACCTGACTCTGTGCCCTCAGACAAGGACAAGTCACAAGTATCTGCAAGTTCAGCTGGTGACACTGTTCAAATGAAAGACTCGGTAATGGATGTTGAGCTGTCAGAGAAAAGTGAGTCTCAGCCACTATGTGGTTCAGTTTCAACCGAACATAATGGGAAAGAAAATGATGTCGATATGATGTCTCCTTCACATCCAGTTGGATCAATTTCTGGTGCTGAAAATGGCAGAAAAACAGGCAAAGATCAAACAGAGAATGGCACAAAAGTAGAGGACGATAGTATGGAGAAGAAAGATGATAACAATTTTGAGAAAGAAAAACGTGCTGCAGTCACAACACTTGCAGCAGCAGCAGTGAAGGCAAAATTTCTGGCAAATGAGGAAGAAGACCAAATCCGAGAACTTGCCACTTCATTGATAGAAAAGCAGTTGCATAAGTTGCAAGCAAAGTTAGCTTTTTTAAGTGAAATGGAGAACTTAGTAATGAGGGTAAGGGAGCATTTAGAGCGGTCACGGCATAAACTTTTCCATGAACGTGCTCTGATAATTGCATCAAAGCTTGGTATACCACCTTCCTCATCTNNNNNNNNNNGTGCACCACCAAGCTTGCCAGCCAATAGAATTCCTATGAATTTTGCAAACTCGTTCCCAAGACCACAAATGATGATGAATCCCCAAAGACCACCAATTCCTAGACCTTTCAGCGCGGCAGCTTCTACCCATCCAAACCCATTAGCATCTGCAACTACAGTTGGAAATCCAGTTCGGCCACCCAGCCAGGAAAAACTTTCCTCTGTTGGGACAAAATAA 2061 0.4178 MSSSDFILMEPAEVVGVSGGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIQDAFMDCNDDIETSSKETADPAASNNDASANKDASECNENNSSDNMEGHGEASKSEDAKAKVDQEIPKQEDVSGEKTPEGTSKSEDADKVKVSLEEENDCALIALKEAFAAVGYSLGPEGPSSFAEVGNPVMALAAFLARLVGSDVAFASAHTSFKSISANSPGTELAARNSFILGGQPDNKEPTTRDSKNEDGQDMINAKQDKPMSEDKDLPNDHNMETEDNVPEDKKQLASENGESEKLNVSKEQSILNHEEGRLDNGNGSSNSKLPNDQAPSTLHDSGGSTSKAENPPSSEEQQEGSLSKELSNSEEGTKDMPASDLCLSDKNGVQQSVKANLTGNHPEPVEKTKNTDVIPDSVPSDKDKSQVSASSAGDTVQMKDSVMDVELSEKSESQPLCGSVSTEHNGKENDVDMMSPSHPVGSISGAENGRKTGKDQTENGTKVEDDSMEKKDDNNFEKEKRAAVTTLAAAAVKAKFLANEEEDQIRELATSLIEKQLHKLQAKLAFLSEMENLVMRVREHLERSRHKLFHERALIIASKLGIPPSSSXXXXAPPSLPANRIPMNFANSFPRPQMMMNPQRPPIPRPFSAAASTHPNPLASATTVGNPVRPPSQEKLSSVGTK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241668g00024 686 ProSiteProfiles Myb-like domain profile. 20 64 IPR001005 -
Stsc241668g00024 686 Gene3D - 17 68 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 657 686 - -
Stsc241668g00024 686 FunFam SWI/SNF complex subunit SMARCC2 isoform C 18 68 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 237 521 - -
Stsc241668g00024 686 SMART sant 18 66 IPR001005 -
Stsc241668g00024 686 PANTHER SWI/SNF COMPLEX-RELATED 18 600 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 82 113 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 388 402 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 248 318 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 495 521 - -
Stsc241668g00024 686 SUPERFAMILY Homeodomain-like 17 70 IPR009057 -
Stsc241668g00024 686 CDD SANT 38 63 IPR001005 -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 425 441 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 322 371 - -
Stsc241668g00024 686 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 68 IPR017930 -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 114 156 - -
Stsc241668g00024 686 ProSiteProfiles SANT domain profile. 17 68 IPR017884 -
Stsc241668g00024 686 Pfam SWIRM-associated region 1 529 605 IPR032451 -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 607 686 - -
Stsc241668g00024 686 MobiDBLite consensus disorder prediction 76 156 - -
Stsc241668g00024 686 Pfam Myb-like DNA-binding domain 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241668g00024 Stsc-Chr241668 145192 149145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241668g00024 22 60 EF-hand Containing Proteins AT3G07740 50.000 2.66e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc241668g00024 SWIRM-assoc_1 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241668g00024 K11649 - gmx:100799723 746.503