Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241668g00024 | ATGTCCTCATCGGATTTTATACTCATGGAACCAGCTGAAGTTGTAGGTGTTAGTGGTGGAAAGTGGACTGATCAGGAAACCCTCTTGCTTCTTGAAGCACTAGAATTGTATAAAGAAAATTGGAATGAAATTGCAGAGCACGTTGGCACAAAATCAAAAGCTCAATGCATTTTGCACTTTGTTCAAATGCCTATTCAGGATGCCTTTATGGACTGTAATGATGACATTGAAACCAGTAGTAAAGAAACAGCAGATCCAGCTGCAAGTAACAATGATGCATCTGCAAATAAGGATGCTTCTGAATGTAATGAGAATAATAGTAGTGATAACATGGAAGGCCATGGCGAAGCTTCCAAGTCTGAAGACGCTAAGGCAAAAGTAGATCAGGAGATTCCAAAACAAGAGGATGTTTCAGGTGAGAAAACCCCTGAGGGAACTTCTAAATCAGAAGATGCCGATAAAGTCAAAGTTAGTCTGGAAGAAGAGAATGACTGTGCTCTAATTGCTCTCAAGGAAGCATTTGCAGCTGTTGGTTATTCTCTTGGACCTGAAGGCCCATCTTCATTTGCTGAAGTTGGTAATCCTGTCATGGCATTGGCAGCTTTCCTAGCGCGCCTGGTGGGTTCTGATGTGGCTTTTGCTTCAGCTCATACCTCCTTTAAATCCATTTCTGCAAATTCTCCTGGCACTGAGCTTGCTGCAAGGAATTCTTTTATTCTGGGAGGTCAACCAGATAATAAGGAACCGACTACAAGGGATTCTAAAAACGAGGACGGCCAAGATATGATAAATGCAAAGCAGGATAAACCAATGTCAGAGGACAAAGATTTACCAAATGATCACAACATGGAAACTGAAGATAATGTTCCAGAGGATAAGAAACAGCTAGCTTCTGAAAATGGAGAATCGGAAAAATTAAATGTTTCAAAGGAGCAATCTATTCTCAACCATGAGGAGGGTAGGCTTGACAATGGTAATGGTTCCAGCAATTCAAAATTACCCAATGATCAAGCTCCATCCACTCTGCATGATTCAGGTGGTTCAACATCCAAGGCTGAAAATCCACCTAGTTCTGAGGAGCAACAAGAGGGAAGTTTGAGCAAAGAACTGTCCAATTCAGAAGAGGGAACAAAGGACATGCCTGCTTCTGACTTGTGTTTGTCAGACAAGAATGGTGTTCAGCAGTCAGTTAAAGCTAATCTTACAGGAAACCATCCAGAACCAGTAGAGAAAACAAAAAATACTGATGTCATACCTGACTCTGTGCCCTCAGACAAGGACAAGTCACAAGTATCTGCAAGTTCAGCTGGTGACACTGTTCAAATGAAAGACTCGGTAATGGATGTTGAGCTGTCAGAGAAAAGTGAGTCTCAGCCACTATGTGGTTCAGTTTCAACCGAACATAATGGGAAAGAAAATGATGTCGATATGATGTCTCCTTCACATCCAGTTGGATCAATTTCTGGTGCTGAAAATGGCAGAAAAACAGGCAAAGATCAAACAGAGAATGGCACAAAAGTAGAGGACGATAGTATGGAGAAGAAAGATGATAACAATTTTGAGAAAGAAAAACGTGCTGCAGTCACAACACTTGCAGCAGCAGCAGTGAAGGCAAAATTTCTGGCAAATGAGGAAGAAGACCAAATCCGAGAACTTGCCACTTCATTGATAGAAAAGCAGTTGCATAAGTTGCAAGCAAAGTTAGCTTTTTTAAGTGAAATGGAGAACTTAGTAATGAGGGTAAGGGAGCATTTAGAGCGGTCACGGCATAAACTTTTCCATGAACGTGCTCTGATAATTGCATCAAAGCTTGGTATACCACCTTCCTCATCTNNNNNNNNNNGTGCACCACCAAGCTTGCCAGCCAATAGAATTCCTATGAATTTTGCAAACTCGTTCCCAAGACCACAAATGATGATGAATCCCCAAAGACCACCAATTCCTAGACCTTTCAGCGCGGCAGCTTCTACCCATCCAAACCCATTAGCATCTGCAACTACAGTTGGAAATCCAGTTCGGCCACCCAGCCAGGAAAAACTTTCCTCTGTTGGGACAAAATAA | 2061 | 0.4178 | MSSSDFILMEPAEVVGVSGGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIQDAFMDCNDDIETSSKETADPAASNNDASANKDASECNENNSSDNMEGHGEASKSEDAKAKVDQEIPKQEDVSGEKTPEGTSKSEDADKVKVSLEEENDCALIALKEAFAAVGYSLGPEGPSSFAEVGNPVMALAAFLARLVGSDVAFASAHTSFKSISANSPGTELAARNSFILGGQPDNKEPTTRDSKNEDGQDMINAKQDKPMSEDKDLPNDHNMETEDNVPEDKKQLASENGESEKLNVSKEQSILNHEEGRLDNGNGSSNSKLPNDQAPSTLHDSGGSTSKAENPPSSEEQQEGSLSKELSNSEEGTKDMPASDLCLSDKNGVQQSVKANLTGNHPEPVEKTKNTDVIPDSVPSDKDKSQVSASSAGDTVQMKDSVMDVELSEKSESQPLCGSVSTEHNGKENDVDMMSPSHPVGSISGAENGRKTGKDQTENGTKVEDDSMEKKDDNNFEKEKRAAVTTLAAAAVKAKFLANEEEDQIRELATSLIEKQLHKLQAKLAFLSEMENLVMRVREHLERSRHKLFHERALIIASKLGIPPSSSXXXXAPPSLPANRIPMNFANSFPRPQMMMNPQRPPIPRPFSAAASTHPNPLASATTVGNPVRPPSQEKLSSVGTK | 686 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241668g00024 | 686 | ProSiteProfiles | Myb-like domain profile. | 20 | 64 | IPR001005 | - | |
Stsc241668g00024 | 686 | Gene3D | - | 17 | 68 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 657 | 686 | - | - | |
Stsc241668g00024 | 686 | FunFam | SWI/SNF complex subunit SMARCC2 isoform C | 18 | 68 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 237 | 521 | - | - | |
Stsc241668g00024 | 686 | SMART | sant | 18 | 66 | IPR001005 | - | |
Stsc241668g00024 | 686 | PANTHER | SWI/SNF COMPLEX-RELATED | 18 | 600 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 82 | 113 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 388 | 402 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 248 | 318 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 495 | 521 | - | - | |
Stsc241668g00024 | 686 | SUPERFAMILY | Homeodomain-like | 17 | 70 | IPR009057 | - | |
Stsc241668g00024 | 686 | CDD | SANT | 38 | 63 | IPR001005 | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 425 | 441 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 322 | 371 | - | - | |
Stsc241668g00024 | 686 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 20 | 68 | IPR017930 | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 114 | 156 | - | - | |
Stsc241668g00024 | 686 | ProSiteProfiles | SANT domain profile. | 17 | 68 | IPR017884 | - | |
Stsc241668g00024 | 686 | Pfam | SWIRM-associated region 1 | 529 | 605 | IPR032451 | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 607 | 686 | - | - | |
Stsc241668g00024 | 686 | MobiDBLite | consensus disorder prediction | 76 | 156 | - | - | |
Stsc241668g00024 | 686 | Pfam | Myb-like DNA-binding domain | 20 | 62 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241668g00024 | Stsc-Chr241668 | 145192 | 149145 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241668g00024 | 22 | 60 | EF-hand Containing Proteins | AT3G07740 | 50.000 | 2.66e-06 | 48.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Stsc241668g00024 | SWIRM-assoc_1 | 4.9e-23 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241668g00024 | K11649 | - | gmx:100799723 | 746.503 |