Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241668g00005 ATGCTATTTTTATGTCAAAAATGCAACCTTTACCTTCTTCCATGCTCCTCTCTACCATTCAAATCAAACTCCATCTGCAACCAAACTTCAACTGCCACCATTCTTAACTGCCATAACCCTTATGCCCCAGATGAACATCATCACAACCCCGTTCACCGCAAACACAATTCCAAATCCACAAAATTTCTTATTCATCACCTTTCCCAGAACAACCAGAATCAGCAACAACTCAGTGCTGCCCAAAAGATTGAGCTTGAAGAACACCCCATGATGCCCCACCAAGAAAAAGTGAAGCTTTTGGAGCTTTCCCTTGTTAGGAAAAGGACCCCTCAGTTCCCTGGTTCCATCTACGTTCAGTCCCCAAGTGACCCTGATGTGGGTTCTTCTCTTCCACCATTAAAGACCCTTTTTCAATCAAGTGCTGACAATAGTGGTGGTGACCATGTTGATGAAGAAGAAGAGGAGAAGATGATAATGCGTGCTGTCGAGATTCGTAGGAAGGTGACTTTGGAGATCTTCAAAGAATCCATGATGAAGCAGGGAAGGTTTGGAATCACTTACACTACTAACCTGGCTAATAGGCTGCAAGGCTTTCTTGACTATGTTATGATTGAAGCTGCTAACTTGAAGAGGATTCCAGAATATTCTAACTCTAGTTTCAATTTGCGCGCCAAAACCGTCATCGAGGACTCCCAGGTTGTGCCACTTATCAGATGGTTGAAGCATAATGAGCTATCATATCCTCATATATCAAAGCTCATTTTGTTGTCGAAAGGAAGAATTGATTTGATAAGGGACCGGGTTCAGTGGTTGAAGTCGCTTCACGTGAAAGGGGAGTTCCTCGGGGTTACACTTGTTAAGGGTGGTGAGAATATTTTGCACCGCAGCTATAAGGAACTCGATGAGATCGTTGAGTATCTGGTGTCCAATGGAGTCAGGAGAGTCTGGATGGGTTATGTCATTAGTCGATGTCCTCAATTGCTGTCCTACAGCTTAGAAGAAGTGAAGACTCGTGTTGCGTTCTATGTCGACATGGGTATGAATGAGAATGATTTCGGCACAATGGTTTTCGATTTCCCCAGAGCACTTGGTTACTTAACTTTGGAAGAAATGAACCAAAAGGTTAATTACTTGAAAGAATTTGGGCTTGAAAATGAGGATGTTGGCAAGTTGCTGGCATTTAGGCCACATTTGATGGGTTGTAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTTTACTATTATGGAATCACTAAAGATGGCATGAGGAGAATGCTTACCCTTAAACCAATGGTCTTCTGTACTGATTTGAAGTTGAATATTGTGCCAAAGGTAAAATTTTTTCAGGACATAGGGGTTAGAGATGATGCAATTGGCAACATGCTTGTGAAGTTTCCTACTCTACTCACTTATAGCCTCAACAAGAAGATTAGGCCAGTGGTTATATTCTTGATGACAAAAGCTGGAGTGACTGAGAAAGATATTGCCAAGGTTGTGGCTCTGGGACCTGAGCTCTTGGGATGCAGCATTGCACAAAAGCTTGAAGTAAATGTTAAATATTTTTTGTCCCTCGGCATACGCGTCCGGCAGCTAGGCGAGATGATTGCCGATTTCCCATTGCTGCTCAGATACAATCCCGATGTCCTTCGGCCTAAGTATGTTTATTTGCGGCGAACCATGATCCGGCCTTTGCGAGATATCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGAAGGGCGAATTATCCCAAGACACAAGGTTCTTGTGGAGAATCAGCTTAATATTAAGCTGAGATACATGTTGGCTAGCAGTGATGTAGAATTCAAGAAACTGGTGAATGATCTCGTCAGAAAGCGCAAAAAATTTCAGTCAGGTGTTGCTGGCGAAGAGGAGGAAGATACTCAATCCGAATCTGTTACTCCAGATGATGTTACTGCTATACTACAAACATAA 1962 0.4241 MLFLCQKCNLYLLPCSSLPFKSNSICNQTSTATILNCHNPYAPDEHHHNPVHRKHNSKSTKFLIHHLSQNNQNQQQLSAAQKIELEEHPMMPHQEKVKLLELSLVRKRTPQFPGSIYVQSPSDPDVGSSLPPLKTLFQSSADNSGGDHVDEEEEEKMIMRAVEIRRKVTLEIFKESMMKQGRFGITYTTNLANRLQGFLDYVMIEAANLKRIPEYSNSSFNLRAKTVIEDSQVVPLIRWLKHNELSYPHISKLILLSKGRIDLIRDRVQWLKSLHVKGEFLGVTLVKGGENILHRSYKELDEIVEYLVSNGVRRVWMGYVISRCPQLLSYSLEEVKTRVAFYVDMGMNENDFGTMVFDFPRALGYLTLEEMNQKVNYLKEFGLENEDVGKLLAFRPHLMGCSIEEQWKPLVKYFYYYGITKDGMRRMLTLKPMVFCTDLKLNIVPKVKFFQDIGVRDDAIGNMLVKFPTLLTYSLNKKIRPVVIFLMTKAGVTEKDIAKVVALGPELLGCSIAQKLEVNVKYFLSLGIRVRQLGEMIADFPLLLRYNPDVLRPKYVYLRRTMIRPLRDIIEFPRFFSYSLEGRIIPRHKVLVENQLNIKLRYMLASSDVEFKKLVNDLVRKRKKFQSGVAGEEEEDTQSESVTPDDVTAILQT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241668g00005 653 PANTHER CGI-12 PROTEIN-RELATED 291 391 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 353 384 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 318 348 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 566 597 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 461 493 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 534 564 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 283 313 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 498 529 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 389 420 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 SMART mt_12 425 456 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 Pfam mTERF 345 612 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 Pfam mTERF 262 379 IPR003690 GO:0003690|GO:0006355
Stsc241668g00005 653 MobiDBLite consensus disorder prediction 627 647 - -
Stsc241668g00005 653 Gene3D Transcription termination factor 3, mitochondrial 392 626 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241668g00005 Stsc-Chr241668 50714 53433 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241668g00005 mTERF 3.3e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241668g00005 K15031 - qsa:O6P43_001902 849.351