Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241668g00004 ATGGCTGCCGCTGATGTTGAGTTCCGGTGCTTCGTTGGTGGGCTTGCATGGGCCACCGATAACGAAGCTCTAGAGAAAGCCTTCTCTCCCTACGGAGAAATCGTTGAATCGAAGGTTATCAACGATCGCGAAACTGGAAGATCCAGAGGTTTCGGATTTGTGACCTTTGCTTCTGAGCAATCCATGAGGGATGCGATCGATGGAATGAACGGCTCCAACCTCGACGGCCGTAACATCACTGTCAACGAAGCTCAGTCCCGCGGAGGAGGCGGCGGCGGCGGCGGCTTCAGAAGCGGAGGTGGCGGTGGATATGGCGGTGGCGGATTCAGCCGCGGAGGTGGTGGTGGTGGATATGGCGGCGGTGGCCGTCGTGAAGGTGGATACAACAGAAATGGCGGCGGCGGCGGCTATGGTGGTGGTGGTGGTTATGGCGGTGGCAGGGACCGTGGCTACGGCGATGGTGGCTCCCGTTACTCTAGAGGCGGTGGGGACTCCGATGGCAGCAGCTGGAGGAACTGA 519 0.5973 MAAADVEFRCFVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQSMRDAIDGMNGSNLDGRNITVNEAQSRGGGGGGGGFRSGGGGGYGGGGFSRGGGGGGYGGGGRREGGYNRNGGGGGYGGGGGYGGGRDRGYGDGGSRYSRGGGDSDGSSWRN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241668g00004 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Stsc241668g00004 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Stsc241668g00004 172 Gene3D - 2 105 IPR012677 -
Stsc241668g00004 172 PANTHER GEO13361P1-RELATED 4 162 - -
Stsc241668g00004 172 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Stsc241668g00004 172 FunFam Glycine-rich RNA-binding protein GRP1A 2 111 - -
Stsc241668g00004 172 SMART rrm1_1 9 82 IPR000504 GO:0003723
Stsc241668g00004 172 CDD RRM2_NsCP33_like 9 84 - -
Stsc241668g00004 172 MobiDBLite consensus disorder prediction 82 102 - -
Stsc241668g00004 172 MobiDBLite consensus disorder prediction 122 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241668g00004 Stsc-Chr241668 35904 37309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241668g00004 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 32.955 2.76e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241668g00004 - K13195 ccaj:109800369 157.918